View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19983_high_10 (Length: 288)
Name: NF19983_high_10
Description: NF19983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19983_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 7399227 - 7399455
Alignment:
| Q |
16 |
atgttaagcataaatcgcgagaccataaactaatttcaacatatatggtgcaaccattataagaaaggagtttctcatctcgccctacttgcttctagcg |
115 |
Q |
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| T |
7399227 |
atgttaagcataaatcgcgagaccataaactaatttcaacatatatggtgcaaccattataagaaaggagtttctcatctcgccctacttgcttctagcg |
7399326 |
T |
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| Q |
116 |
cgtcctacagcattttagattgtatattccaaaaggtgtaaaaatgttgaaaaatccctccataaagcctttattttttggattttaaaatccgaaatag |
215 |
Q |
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| T |
7399327 |
cgtcctacaacattttagattgtatattccaaaaggtctaaaaatgttgaaaaatccctccataaagcctttattttttggattttaaaatccgaaatag |
7399426 |
T |
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| Q |
216 |
ggcgcacgataagcttagtatagattagt |
244 |
Q |
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| T |
7399427 |
ggcgcacaataagcttagtatagattagt |
7399455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 32432932 - 32432834
Alignment:
| Q |
118 |
tcctacagcattttagattgtatattccaaaaggtgtaaaaatgttgaaaaatccctccataaagcctttattttttggattttaaaatccgaaataggg |
217 |
Q |
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| T |
32432932 |
tcctacaacatttcggattatataatacaaaaggtgtaaaaacgttcaggaatcc-tccataaaccatccatttttcggattttaaaatccgaaataggg |
32432834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 25790330 - 25790231
Alignment:
| Q |
117 |
gtcctacagcattttagattgtatattccaaaaggtgtaaaaatgttgaaaaatccctccataaagcctttattttttggattttaaaatccgaaatagg |
216 |
Q |
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| T |
25790330 |
gtcctacaacattttagattatataatctgaaaggtgtaaaaatgttcaaaaa-ccctccataaaccctccattttttggatattaaaatctaaaatagg |
25790232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 17648490 - 17648531
Alignment:
| Q |
118 |
tcctacagcattttagattgtatattccaaaaggtgtaaaaa |
159 |
Q |
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||||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
17648490 |
tcctacaacattttagattatataatccaaaaggtgtaaaaa |
17648531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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