View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19983_high_2 (Length: 446)
Name: NF19983_high_2
Description: NF19983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19983_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 3649734 - 3649907
Alignment:
| Q |
13 |
aatattgtactacaatagttgtgtgattttcaatcacgtctacgatcgcatcgcaatcatacaagaaaccacatcagttcctacgatgtccattcaaata |
112 |
Q |
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| T |
3649734 |
aatattgtaccacaatagttgtgtgattttcaatcacgtctacgatcgcatcgcaatcatacaagaaaccgcatcagttcctacgatgtccattcaaata |
3649833 |
T |
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| Q |
113 |
ttctcaccaaaaattaaaactttagaaccacaaatacgaatcttctttagatataatgaccaatcttaccttca |
186 |
Q |
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| T |
3649834 |
ttctcaccaaaaattaaaactttagaaccacaaatacgaatcttctttagatataatgaacaatcttaccttca |
3649907 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 33420642 - 33420713
Alignment:
| Q |
326 |
aatatgtttatgctaagcaataactgaacaatttatactaattctcctatcaaggctagaattagtagtcct |
397 |
Q |
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| T |
33420642 |
aatatgtctatgctacacattaagtgaacaatttatactaattctcccatcaaggttagggttagtagtcct |
33420713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 428
Target Start/End: Original strand, 4309218 - 4309364
Alignment:
| Q |
282 |
ttgaaggtttaaacacgccaaaataagtatacaattatccttaaaatatgtttatgctaagcaataactgaacaatttatactaattctcctatcaaggc |
381 |
Q |
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| T |
4309218 |
ttgaaggtttaagaacgtctaattaagcacacaattatccctataatatgtttatggaagacaataacaggattatatatactagttatgttagcaaggc |
4309317 |
T |
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| Q |
382 |
tagaattagtagtcctttgattcatatcaattcatgaataataataa |
428 |
Q |
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| T |
4309318 |
tagggttagtcgtccttggattcatatcaattcatgaataatcataa |
4309364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 9618760 - 9618834
Alignment:
| Q |
283 |
tgaaggtttaaacacgccaaaataagtatacaattatccttaaaatatgtttatgctaagcaataactgaacaat |
357 |
Q |
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| T |
9618760 |
tgaagatttaaaaacgataaattaagtttacaattatctttataatatgtcgatgctaagcaataactgaacaat |
9618834 |
T |
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Back To:
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 30039598 - 30039656
Alignment:
| Q |
305 |
taagtatacaattatccttaaaatatgtttatgctaagcaataactgaacaatttatac |
363 |
Q |
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| T |
30039598 |
taagtatactattatttttagaatatgtctatgctaaccaataattgaacaatttatac |
30039656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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