View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19983_high_5 (Length: 398)

Name: NF19983_high_5
Description: NF19983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19983_high_5
NF19983_high_5
[»] chr7 (3 HSPs)
chr7 (15-201)||(5984469-5984656)
chr7 (322-389)||(5984277-5984344)
chr7 (111-195)||(20184738-20184822)
[»] chr3 (2 HSPs)
chr3 (111-213)||(47730244-47730346)
chr3 (111-213)||(12998024-12998126)
[»] chr4 (2 HSPs)
chr4 (107-213)||(8625077-8625185)
chr4 (107-213)||(22136711-22136818)
[»] chr6 (2 HSPs)
chr6 (117-213)||(12392623-12392719)
chr6 (111-208)||(35025507-35025604)
[»] chr2 (1 HSPs)
chr2 (107-213)||(9838389-9838498)
[»] chr8 (1 HSPs)
chr8 (326-381)||(8544775-8544830)
[»] chr5 (1 HSPs)
chr5 (117-201)||(13460410-13460494)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 5984656 - 5984469
Alignment:
Q  15 accttcttttatttaa-ccttgaaaagatagagacctcaaatccccaaagtttgagtcttctgtttgtatcactcgaaatcttgaaagccttcacaaaca 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984656 accttcttttatttaaaccttgaaaagatagagacctcaaatccccaaagtttgagtcttctgtttgtatcactcgaaatcttgaaagccttcacaaaca 5984557  T
Q  114 aatattttctacctagaactatgtaattttgaattctccatcgcatcgggtgatacgtaggagcaagatcaaactcttgtcaaacaca 201  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  5984556 aatattttctacctagaactatgtaattttgaattctctatcgcatcggatgatacgtaggagcaagatcaaactcttgacaaacaca 5984469  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 5984344 - 5984277
Alignment:
Q  322 ctttcacaattgattagaggtaaccgttttttaacggatgtcgtgggatgctaatacttttcctatgc 389  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5984344 ctttcacaattaattagaggtaaccgttttttaacggatgtcatgggatgctaatacttttcctatgc 5984277  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 20184822 - 20184738
Alignment:
Q  111 acaaatattttctacctagaactatgtaattttgaattctccatcgcatcgggtgatacgtaggagcaagatcaaactcttgtca 195  Q
    ||||| |||||||||| ||||||| |||| |||||||||||||||||| | |  ||||||||||||||| |||||||||||||||    
T  20184822 acaaacattttctacccagaactacgtaactttgaattctccatcgcaccagaagatacgtaggagcaaaatcaaactcttgtca 20184738  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 47730244 - 47730346
Alignment:
Q  111 acaaatattttctacctagaactatgtaattttgaattctccatcgcatcgggtgatacgtaggagcaagatcaaactcttgtcaaacacagtaataaca 210  Q
    ||||| |||||||||| ||||||| |||  ||||| |||||||||||| | || |||||||||||||||||| ||||||||||||| |||| |||||| |    
T  47730244 acaaacattttctacccagaactacgtatctttgatttctccatcgcacctggagatacgtaggagcaagatgaaactcttgtcaagcacaataataaaa 47730343  T
Q  211 aaa 213  Q
    |||    
T  47730344 aaa 47730346  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 12998126 - 12998024
Alignment:
Q  111 acaaatattttctacctagaactatgtaattttgaattctccatcgcatcgggtgatacgtaggagcaagatcaaactcttgtcaaacacagtaataaca 210  Q
    ||||| ||||||| || ||||||| |||  ||| | |||||||||||| | || |||||||||||||||||| ||||||||||||| |||| |||||| |    
T  12998126 acaaacattttcttcccagaactacgtatcttttatttctccatcgcacctggagatacgtaggagcaagatgaaactcttgtcaagcacaataataaaa 12998027  T
Q  211 aaa 213  Q
    |||    
T  12998026 aaa 12998024  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 8625185 - 8625077
Alignment:
Q  107 acaaacaaatattttctacctagaactatgtaattttgaattctcc--atcgcatcgggtgatacgtaggagcaagatcaaactcttgtcaaacacagta 204  Q
    ||||| ||| ||||||||||||||||||||||  |||||||||||   |||||| | ||  || |||||||||||||||||| |||||||||||||| ||    
T  8625185 acaaagaaacattttctacctagaactatgtagctttgaattctctctatcgcaccaggaaatgcgtaggagcaagatcaaattcttgtcaaacacaata 8625086  T
Q  205 ataacaaaa 213  Q
    |||||||||    
T  8625085 ataacaaaa 8625077  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 22136818 - 22136711
Alignment:
Q  107 acaaacaaatattttcta-cctagaactatgtaattttgaattctccatcgcatcgggtgatacgtaggagcaagatcaaactcttgtcaaacacagtaa 205  Q
    ||||||||| |||||||| |||||||||| |||  |||||||| |||||||||   || |||| || |||||||||||  |||||||||||||||| |||    
T  22136818 acaaacaaacattttctatcctagaactacgtagctttgaattttccatcgcactaggagatatgttggagcaagatctcactcttgtcaaacacaataa 22136719  T
Q  206 taacaaaa 213  Q
    ||||||||    
T  22136718 taacaaaa 22136711  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 12392623 - 12392719
Alignment:
Q  117 attttctacctagaactatgtaattttgaattctccatcgcatcgggtgatacgtaggagcaagatcaaactcttgtcaaacacagtaataacaaaa 213  Q
    |||||||||| ||||||| |||  ||||| |||||||||||| | |  |||||||||||||||||| ||||||||||||| |||| |||||| ||||    
T  12392623 attttctacccagaactacgtagctttgatttctccatcgcacctgaagatacgtaggagcaagatgaaactcttgtcaagcacaataataaaaaaa 12392719  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 35025507 - 35025604
Alignment:
Q  111 acaaatattttctacctagaactatgtaattttgaattctccatcgcatcgggtgatacgtaggagcaagatcaaactcttgtcaaacacagtaataa 208  Q
    ||||| ||||| |||| ||||||| |||  ||||| |||||||||||| | || |||||||||||||||||| |||||||| |||| |||| ||||||    
T  35025507 acaaacattttttacccagaactacgtagctttgatttctccatcgcacctggagatacgtaggagcaagatgaaactcttttcaagcacaataataa 35025604  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 9838498 - 9838389
Alignment:
Q  107 acaaacaaatattttctacctagaactatgtaattttgaattctccatcgcatcggg---tgatacgtaggagcaagatcaaactcttgtcaaacacagt 203  Q
    |||||||||||||||||| | || || | |||  ||||| ||||||||| |||  ||   | |||||||||||||||||| ||||||||||||||||| |    
T  9838498 acaaacaaatattttctatcgaggaccacgtagctttgatttctccatcacataaggagataatacgtaggagcaagatcgaactcttgtcaaacacaat 9838399  T
Q  204 aataacaaaa 213  Q
    ||||||||||    
T  9838398 aataacaaaa 9838389  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 8544830 - 8544775
Alignment:
Q  326 cacaattgattagaggtaaccgttttttaacggatgtcgtgggatgctaatacttt 381  Q
    ||||||| ||||||| | ||| |||||||| |||||||||||||||||||||||||    
T  8544830 cacaattaattagagatgaccattttttaatggatgtcgtgggatgctaatacttt 8544775  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 13460410 - 13460494
Alignment:
Q  117 attttctacctagaactatgtaattttgaattctccatcgcatcgggtgatacgtaggagcaagatcaaactcttgtcaaacaca 201  Q
    |||||||||| | ||||| |||  ||||| |||||||||| | | |  |||||||||||||||||| |||||||| |||| ||||    
T  13460410 attttctacccaaaactacgtagctttgatttctccatcgtacctgaagatacgtaggagcaagatgaaactcttatcaagcaca 13460494  T

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