View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19983_high_6 (Length: 388)
Name: NF19983_high_6
Description: NF19983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19983_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 172 - 372
Target Start/End: Complemental strand, 25227282 - 25227082
Alignment:
| Q |
172 |
cctcgacaagggaaggaattgaaggtaaagaagcattgctactttcttcttgcaaaaccaaagagaaaaccttgttcaaggtaggtagatgatacatcaa |
271 |
Q |
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| T |
25227282 |
cctcgacaagggaaggaattgaaggtaaagaagcattgctactttcttcttgcaaaaccaaaaagaaaaccttgttcaaggtaggtagaagatacatcaa |
25227183 |
T |
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| Q |
272 |
taacacttgagtcttgacaacagaaaattgctcactgaggtcagtcaaaaactgaatgatttggttaggtacactaacagcatcacatctgcattgatat |
371 |
Q |
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| T |
25227182 |
taacacttgagtcttgacaacagaaaattgctcactgaggtcagtcaaaaactgaatgatttggttaggtaccctaacagcatcacatctgcattgatat |
25227083 |
T |
|
| Q |
372 |
g |
372 |
Q |
| |
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| |
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| T |
25227082 |
g |
25227082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 25229360 - 25229209
Alignment:
| Q |
1 |
agtcgttgtgctttggttatcagcttatgatttttgcttctgatcttcttgtacacatttggttatgtttcagtcatctttccttctgttgcttttctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||| |
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| T |
25229360 |
agtcgttgtgctttggttatcagcttatgatttttgcttctgatcttcttgtacacctttggttatgtttcaatcatctttccttatcttgcttttctga |
25229261 |
T |
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| Q |
101 |
atatcctattatgaagtccattctcacctgcttctaatctttggaatttcaa |
152 |
Q |
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| T |
25229260 |
atctcctattctgaagtccattctgatttgcttctaatctttggaatttcaa |
25229209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 336
Target Start/End: Original strand, 30757377 - 30757502
Alignment:
| Q |
211 |
tactttcttcttgcaaaaccaaagagaaaaccttgttcaaggtaggtagatgatacatcaataacacttgagtcttgacaacagaaaattgctcactgag |
310 |
Q |
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||||||||||||| ||||||||||||||| ||| ||||||||||| | ||| ||||||||| ||| ||||||| ||| || ||||||||| | ||| |
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| T |
30757377 |
tactttcttcttgtaaaaccaaagagaaattcttattcaaggtaggcaatggatccatcaataagactagagtcttcacagcaaaaaattgcttattgat |
30757476 |
T |
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| Q |
311 |
gtcagtcaaaaactgaatgatttggt |
336 |
Q |
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| ||| ||||||||||||||||||| |
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| T |
30757477 |
gctagttaaaaactgaatgatttggt |
30757502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 336
Target Start/End: Original strand, 30764829 - 30764954
Alignment:
| Q |
211 |
tactttcttcttgcaaaaccaaagagaaaaccttgttcaaggtaggtagatgatacatcaataacacttgagtcttgacaacagaaaattgctcactgag |
310 |
Q |
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||||||||||||| ||||||||||||||| ||| ||||||||||| | ||| ||||||||| ||| ||||||| ||| || ||||||||| | ||| |
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| T |
30764829 |
tactttcttcttgtaaaaccaaagagaaattcttattcaaggtaggcaatggatccatcaataagactagagtcttcacagcaaaaaattgcttattgat |
30764928 |
T |
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| Q |
311 |
gtcagtcaaaaactgaatgatttggt |
336 |
Q |
| |
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| ||| ||||||||||||||||||| |
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| T |
30764929 |
gctagttaaaaactgaatgatttggt |
30764954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 18737600 - 18737716
Alignment:
| Q |
36 |
gcttctgatcttcttgtacacatttggttatgtttcagtcatctttccttctgttgcttttctgaatatcctattatgaagtccattctcacctgcttct |
135 |
Q |
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|||||||||||| |||| ||| ||||||| |||||| ||||| |||||| || | |||| ||||| ||| |||||||| || |||| |||||||||| |
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| T |
18737600 |
gcttctgatcttattgtgcacctttggttgtgtttctatcatcattccttttgatttttttatgaatttccgattatgaattcttttctgacctgcttct |
18737699 |
T |
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| Q |
136 |
aatctttggaatttcaa |
152 |
Q |
| |
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| T |
18737700 |
gaactttggattttcaa |
18737716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 336
Target Start/End: Original strand, 44668967 - 44669097
Alignment:
| Q |
206 |
attgctactttcttcttgcaaaaccaaagagaaaaccttgttcaaggtaggtagatgatacatcaataacacttgagtcttgacaacagaaaattgctca |
305 |
Q |
| |
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|||| |||| |||||||| | |||||||||||||||||||||||||| ||| || ||| ||| || | ||||||||||| | || |||||||||||| |
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| T |
44668967 |
attgttactctcttcttgaataaccaaagagaaaaccttgttcaaggaaggaagtggatccattaagagaacttgagtcttaagcactgaaaattgctca |
44669066 |
T |
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| Q |
306 |
ctgaggtcagtcaaaaactgaatgatttggt |
336 |
Q |
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| || |||| | ||| ||||||||||||| |
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| T |
44669067 |
ttaagaccagtaagaaattgaatgatttggt |
44669097 |
T |
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