View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19983_high_8 (Length: 379)
Name: NF19983_high_8
Description: NF19983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19983_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 32729529 - 32729880
Alignment:
| Q |
8 |
taacataaattgatgtatttaatacaaattttgatctaattcacaatcaataaggtagtactgcacttgctatagccgaagacatgtgcatatttgatca |
107 |
Q |
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| T |
32729529 |
taacataaattgatctatttaatacaaattttaatctaattcacaatcaataaggtagtactacacatgctatagccgaagacatatgcatatttgatca |
32729628 |
T |
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| Q |
108 |
aacttcgtaatcaaacaccgtgttttattgtttgcattttaaaacaacatatcttatgtacatgttgaggttatattaattagtttattgaagtctacaa |
207 |
Q |
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| T |
32729629 |
aacttcgtaatcaaacaccgtgttttattgtttgcattttaaaacaacatatcttatgtacatgttgaggttctattaattagtttattgaagtctacaa |
32729728 |
T |
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| Q |
208 |
tttatgcaactcggatagaaaggctaagtatctctcacatgataatttcacgcgaaatctccacataaggaaatcaaaataaaaaacattgtcttagtga |
307 |
Q |
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| T |
32729729 |
tttatgcaactcggatagaaaggctaagtatctctcacatgataatttcacgcgaaatctccacataaggaaatcaaaat-aaaaacattgtcttagtga |
32729827 |
T |
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| Q |
308 |
tgtcaaaaacttgttggtaaaagtcaaaacaacatatacagttacaacactgc |
360 |
Q |
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| T |
32729828 |
tgtcaaaaacttgttggtaaaagtcaaaacaacatatatagttacaacactgc |
32729880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 3694015 - 3694047
Alignment:
| Q |
9 |
aacataaattgatgtatttaatacaaattttga |
41 |
Q |
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| T |
3694015 |
aacataaattgatgtatttaatacaaattttga |
3694047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 5713257 - 5713285
Alignment:
| Q |
13 |
taaattgatgtatttaatacaaattttga |
41 |
Q |
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| T |
5713257 |
taaattgatgtatttaatacaaattttga |
5713285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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