View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19983_high_9 (Length: 347)
Name: NF19983_high_9
Description: NF19983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19983_high_9 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 98 - 342
Target Start/End: Complemental strand, 622335 - 622092
Alignment:
| Q |
98 |
ctaggaaataagcgggtgctattgatttttgatgtcatttgcactttaacttgtctttttggacnnnnnnnnngaaagattaaaataaattactttgacg |
197 |
Q |
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| T |
622335 |
ctaggaaataagcgggtgctattgatttttgatgtcatttgcactttaacttgtctttttagacaaaaaaaa-gaaagattaaaataaattaatttgacg |
622237 |
T |
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| Q |
198 |
aaagaggacgaatggttgatagagaaataagaataaatatggttttgaagtgaatgttttattttctatgaattagtctatctatttaagtgtgggtttg |
297 |
Q |
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| T |
622236 |
aaagaggacgaatggttgatagagaaataagaataaatatggttttgaagtgaatgttttattttctatggattagtctatctatttaagtgtgggtttg |
622137 |
T |
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| Q |
298 |
gtttcctgtttgcaacatacaaaagcacatttgcatattcttcga |
342 |
Q |
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| T |
622136 |
gtttcctgtttgcaacatacaaaagcacatttgcatgttattcga |
622092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 622612 - 622544
Alignment:
| Q |
20 |
atcctcaccatgaagatagatagcctattcttcactgtagtatgatatatgttatcatggtttattctt |
88 |
Q |
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| T |
622612 |
atcctgaccatgaagatagatagcctattcttcactgtagtatgatatatgttatcatggtttattctt |
622544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 9607555 - 9607606
Alignment:
| Q |
282 |
tttaagtgtgggtttggtttcctgtttgcaacatacaaaagcacatttgcat |
333 |
Q |
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| T |
9607555 |
tttaagtgtgtgtttggtttcccgtttgcgacacacaaaagcacgtttgcat |
9607606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 43292876 - 43292836
Alignment:
| Q |
293 |
gtttggtttcctgtttgcaacatacaaaagcacatttgcat |
333 |
Q |
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| T |
43292876 |
gtttggtttcctgtttgcaccacacaaaagcacgtttgcat |
43292836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 49461 - 49509
Alignment:
| Q |
284 |
taagtgtgggtttggtttcctgtttgcaacatacaaaagcacatttgca |
332 |
Q |
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| T |
49461 |
taagtgtgtgtttggtttcccgtttgcaataaacaaaagcacgtttgca |
49509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 29471844 - 29471804
Alignment:
| Q |
293 |
gtttggtttcctgtttgcaacatacaaaagcacatttgcat |
333 |
Q |
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| T |
29471844 |
gtttggttttccgtttgcaacatataaaagcacatttgcat |
29471804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 3947068 - 3947024
Alignment:
| Q |
288 |
tgtgggtttggtttcctgtttgcaacatacaaaagcacatttgca |
332 |
Q |
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| T |
3947068 |
tgtgtgtttggtttcgtgtttgcaacaaacaaaagcatatttgca |
3947024 |
T |
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