View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19983_low_14 (Length: 234)
Name: NF19983_low_14
Description: NF19983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19983_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 36610062 - 36610156
Alignment:
| Q |
19 |
atgagagtagatagaccagacattctatacgctaatcgacaagatggacggttgagattgtatcttgttccagatcaatgcaacacaaatgatgt |
113 |
Q |
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| T |
36610062 |
atgagagtagatagaccagacattctatatgctaatcgacaagatggacggttgagattgtatcttgttccagatgaatgcaacgcaaatgatgt |
36610156 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 36610218 - 36610257
Alignment:
| Q |
175 |
attacaatagtagaatcggaatcagaagaggaaataatgg |
214 |
Q |
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| T |
36610218 |
attacaatagtagaatcggaatcagaagaggaaataatgg |
36610257 |
T |
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