View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19983_low_3 (Length: 434)
Name: NF19983_low_3
Description: NF19983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19983_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 33344016 - 33343620
Alignment:
| Q |
19 |
ttcctattctctcatttaaatgagaaatttagagttgtaatcttagtatattttaatagtaattcatttattgttataagctactctatgaaagttctca |
118 |
Q |
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| T |
33344016 |
ttcctattctctcatttaaatgagaaatatagaattgaaatcttagtatattttaatagtaattcatttatttttataagctactctatgaaagttctca |
33343917 |
T |
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| Q |
119 |
acaagaacatagacaagaaggaacaaaatggggttctgcgggacactgaaataagatctaacttattctcagttactataaaatatagagaattcagttt |
218 |
Q |
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| T |
33343916 |
acaagaacatagacaagaaggaacaaaatggggttctgcgggatactgaaataagatctaacttattctcagttactataaaatatagagaattcagttt |
33343817 |
T |
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| Q |
219 |
atttggactgaatttctagacgagatagaggtataacatcatgttgactacagtattgtcgcattatagtattaaatatccctacttttgcgatacaata |
318 |
Q |
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||||||||||||||||||||||||||||| ||| |||| ||||||||||||| |||||| || ||| ||||||||||||||| |||||||||| |
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| T |
33343816 |
atttggactgaatttctagacgagatagaagtagaacaacatgttgactacactattgttgc--------atttaatatccctacttttacgatacaata |
33343725 |
T |
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| Q |
319 |
caaataccaatgaaatgtaccattgattggcatgtgaggctcacatgccgttt-ttcaattagatttttctttctaccaaacaaacataggagagatctg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||||| |
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| T |
33343724 |
caaataccaatgaaatgtaccattgattggcatgtgaagctcacatgccgtttcatcaaattgatttttctttctaccaaacaaatataggagagatctg |
33343625 |
T |
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