View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19984_high_1 (Length: 445)
Name: NF19984_high_1
Description: NF19984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19984_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 46936809 - 46936517
Alignment:
| Q |
1 |
tccttagagttgaaataagaacttactttcgaagctgctgctgatgtgcaaattgccatgataaacgtctaggtccacacaagattcaagggattggtgc |
100 |
Q |
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| T |
46936809 |
tccttagagttgaaataagaacttactttcgaagctgttgctgatgtgcaaattgccatgataaacgtctaggtccacacaagattcaagggattggtgc |
46936710 |
T |
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| Q |
101 |
tggctttgttcccggggtattggacgttagtcttgtcgacgaagtaattcaagtaagttttaagg-------nnnnnnnataatggtgcactaaaacccg |
193 |
Q |
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| T |
46936709 |
tggctttgttcccggggtattggacgttagtcttgtcgacgaagtaattcaagtaagttttaaggtttttttaataattataatggtgcactaaaacccg |
46936610 |
T |
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| Q |
194 |
gggtgttggttgttagtcttgttggatgttagtcttgtcg-caaagtaattcaagtaagttcccagggtgctgctttagtttttactgctggc |
285 |
Q |
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| T |
46936609 |
gggtgttggttgttagtcttgttggatgttagtcttgtcgacgaagtaattcaagtaagttcccggggtgctgctttagtttttactgctggc |
46936517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 390
Target Start/End: Complemental strand, 46936515 - 46936482
Alignment:
| Q |
357 |
aatgcacaaaaagccaattatggacttcttaaat |
390 |
Q |
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| T |
46936515 |
aatgcacaaaaagccaattatggacttcttaaat |
46936482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 25125461 - 25125594
Alignment:
| Q |
1 |
tccttagagttgaaataagaacttactttcgaagctgctgctgatgtgcaaattgccatgataaacgtctaggtccacacaagattcaagggattggtgc |
100 |
Q |
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| T |
25125461 |
tccttagagttgaaataagaacttacttttgaagctgttgctgatgtgcaaattgccatgacaaacgtctacgaccacacaagattcaagggattggtgc |
25125560 |
T |
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| Q |
101 |
tggctttgttcccggggtattggacgttagtctt |
134 |
Q |
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| T |
25125561 |
tggttttgttaccggggtattggacgttagtctt |
25125594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 863366 - 863404
Alignment:
| Q |
71 |
aggtccacacaagattcaagggattggtgctggctttgt |
109 |
Q |
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| T |
863366 |
aggtcctcacaagattcaagggattggtgctggctttgt |
863404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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