View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19984_low_4 (Length: 311)
Name: NF19984_low_4
Description: NF19984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19984_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 43693999 - 43693705
Alignment:
| Q |
1 |
atttgtacttaccctgtattaatccctttaataatttttgtcctcacaatgtccggatgcactgcattgatagttactcttgcattccttgcctatgatt |
100 |
Q |
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| T |
43693999 |
atttgtacttaccctgtattaagccctttaataatttttgtcctcacaatgtccggatgcactgcattgttagttactcttgcattccttgcctatgatt |
43693900 |
T |
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| Q |
101 |
tcccaatatttnnnnnnngtatcaatacaaagttttattttagtggcatgaatatcacccttaaccataacaataacaaaaataatatatttgttaaaaa |
200 |
Q |
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| T |
43693899 |
tcccaatatttaaaaaaagtatcaatacaaagttttattttagtagcatgattatcacccttaaccataacaataacaaaaataatatatttgttaaaaa |
43693800 |
T |
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| Q |
201 |
ataatgtcctgcaatttaggaaggaaataagcataagaaattatcaaagttttgttgcgttttaaaataccaatccctttctgttgcctatgttt |
295 |
Q |
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| T |
43693799 |
ataatgtcctgcaatttaggaaggaaataagcataagaaattatcaaagttttgttgcgttttaaaatacaaatccctttctgttgcctatgttt |
43693705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 43691860 - 43691793
Alignment:
| Q |
29 |
taataatttttgtcctcacaatgtccggatgcactgcattgatagttactcttgcattccttgcctat |
96 |
Q |
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|||||||| |||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43691860 |
taataattcctgtcttcacaatgcctggatgcactgcattgatagttactcttgcattccttgcctat |
43691793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 34748916 - 34748875
Alignment:
| Q |
55 |
ggatgcactgcattgatagttactcttgcattccttgcctat |
96 |
Q |
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| T |
34748916 |
ggatgaactgcattcatagttactcttgctttccttgcctat |
34748875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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