View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19984_low_6 (Length: 261)
Name: NF19984_low_6
Description: NF19984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19984_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 13870557 - 13870734
Alignment:
| Q |
18 |
acgccaaggataatccgcatcgatttcatcatcgttggggttgaaatagtgaaccagtggaggtgcggtgtaggagatggcgaggtaagacacggtggca |
117 |
Q |
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| T |
13870557 |
acgccaaggataatccgcatcgatttcatcatcgttggggttgaaatagcgaaccagtggaggtgcggtgtaggagatggcgaggtaagacacggcggca |
13870656 |
T |
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| Q |
118 |
gtaacaatggagtggcagcgaaacaatgcaggtacggtggctttgatagaggagaagaggcgggaaaatgacattgag |
195 |
Q |
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| T |
13870657 |
gtaacaatggagtggcggcgaatcaatgcagttacggtggctttgatagaggagaagaggcgggaaaatgccattgag |
13870734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 13871152 - 13871206
Alignment:
| Q |
196 |
gttgaaattttcattctttgaagttcacagtagcacctatgaagtaacaaatcat |
250 |
Q |
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| T |
13871152 |
gttgaaattttcattctttgaagttcacagtagcacctatgaagtaacaaatcat |
13871206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 13875481 - 13875527
Alignment:
| Q |
52 |
ttggggttgaaatagtgaaccagtggaggtgcggtgtaggagatggc |
98 |
Q |
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| T |
13875481 |
ttggtgttgaaatagcgaatgagtggaggtgcggtgtaggagatggc |
13875527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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