View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19984_low_7 (Length: 248)
Name: NF19984_low_7
Description: NF19984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19984_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13871347 - 13871582
Alignment:
| Q |
1 |
agcaaatttcaatgttaaaactgtttgaaatacatttagttaagataacttgtttgttagtaatccgtaagtcctggaatataagtcacactattggctc |
100 |
Q |
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| T |
13871347 |
agcaaatttcaatgttaaaactgtttgaaatacatttagttaagatatcttgtttgttagtaatccgtaagtcctggaatataagtcacactattggcac |
13871446 |
T |
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| Q |
101 |
atttgcattatattctcttcaatacactttaaagaggttgaatcatcaaatgttactcttcccatagatagagattaatagtttgtttgttttacatcct |
200 |
Q |
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| T |
13871447 |
atttgcattatattctcttcaatacactttaaagagtttgaatcatcaaatgttactcttcccatagat--agattaatagtttgtttgttttacatcct |
13871544 |
T |
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| Q |
201 |
acggctatactgacaagagtttgtggcaagccaatttt |
238 |
Q |
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| T |
13871545 |
acggctataccgacaagagtttgtggcaagccaatttt |
13871582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 12957543 - 12957481
Alignment:
| Q |
13 |
tgttaaaactgtttgaaatacatttagttaagataacttgtttgttagtaatccgtaagtcct |
75 |
Q |
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| T |
12957543 |
tgttaaaactattggaaatacatttagttaagataacttgtttgttagtaatcagtaagtcct |
12957481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 13873714 - 13873776
Alignment:
| Q |
4 |
aaatttcaatgttaaaactgtttgaaatacatttagttaagataacttgtttgttagtaatcc |
66 |
Q |
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| T |
13873714 |
aaatttcaatgataaaactattggaaattcatttagttaagataatttgtttattagtaatcc |
13873776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 13877609 - 13877671
Alignment:
| Q |
4 |
aaatttcaatgttaaaactgtttgaaatacatttagttaagataacttgtttgttagtaatcc |
66 |
Q |
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| T |
13877609 |
aaatttcaatgataaaactattggaaattcatttagttaagataatttatttattagtaatcc |
13877671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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