View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19985_high_2 (Length: 363)

Name: NF19985_high_2
Description: NF19985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19985_high_2
NF19985_high_2
[»] chr3 (3 HSPs)
chr3 (23-334)||(38180399-38180711)
chr3 (23-334)||(38185068-38185380)
chr3 (23-326)||(38170594-38170897)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 23 - 334
Target Start/End: Complemental strand, 38180711 - 38180399
Alignment:
Q  23 catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38180711 catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatc 38180612  T
Q  123 tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg 222  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38180611 tacttacacactcgccttaccaacaaatcaaccatctcgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg 38180512  T
Q  223 aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38180511 aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg 38180412  T
Q  323 ctta-cctacggt 334  Q
    |||| ||||||||    
T  38180411 cttagcctacggt 38180399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 23 - 334
Target Start/End: Complemental strand, 38185380 - 38185068
Alignment:
Q  23 catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc 122  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  38185380 catcatcacatacccactacacggtcacataaaccctgcactccaattcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatc 38185281  T
Q  123 tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg 222  Q
    |||||||||||| |||||| ||||||| |||||||||| ||||| |||||||||||||||||||| ||| ||||||| ||   ||| |||||||||||||    
T  38185280 tacttacacactggccttatcaacaaaccaaccatcccaggcctctccttcgccaccttctctgatggctacgacgacggtaaaaatttcgaaagcaacg 38185181  T
Q  223 aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg 322  Q
    |||||||  || |||||  ||  ||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38185180 aagacttcatcgcctacaggtccgagcttaagtgccactgctcagaatttctaacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg 38185081  T
Q  323 ctta-cctacggt 334  Q
    |||| ||||||||    
T  38185080 cttagcctacggt 38185068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 326
Target Start/End: Complemental strand, 38170897 - 38170594
Alignment:
Q  23 catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc 122  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38170897 catcataacatacccactacaaggtcacataaaccctgccctccaattcaccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatc 38170798  T
Q  123 tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg 222  Q
     ||||| ||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||| || | ||||| |    || |||    
T  38170797 cacttatacagtcgccttatcaacaaaccaaccatcccgggcctctccttcgccaccttctctgacggctatgacgacggtcaaaaatcctttggcgacg 38170698  T
Q  223 aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg 322  Q
    ||||| | ||| |||||  || |||| ||| ||| ||| |||| |||||||||||||||||||| ||||||  |||||| |||  || ||||||||||||    
T  38170697 aagacatcgtctcctacatgtctgagtttacgcgtcgcggctcagaatttctcacaaatatcattctctcctccaaacaagaaaatcatccattcacttg 38170598  T
Q  323 ctta 326  Q
    ||||    
T  38170597 ctta 38170594  T

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