View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19985_high_3 (Length: 362)
Name: NF19985_high_3
Description: NF19985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19985_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 52127012 - 52127358
Alignment:
| Q |
16 |
agccagtcccacatcttgacttttggtactataatctcacccgattcgtattcatgaaacaatctcattatttcggtgtttcccaagaaaccctccaatt |
115 |
Q |
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| T |
52127012 |
agccagtcccacatcttgacttttggtactataatctcacccgattcgtattcatgaaacaatctcattatttcggtgtttcccaagaaaccctccaatt |
52127111 |
T |
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| Q |
116 |
catttcaatttccgcttaattcaaacgcgcttaattcttcttcgaatctctgcacaaacaaatggtttcgtacatgaacattctactctacggcgccgga |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52127112 |
catttcaatttccgcttaatccaaacgcgcttaattcttcttcgaatctctgcacaaacaaatggtttcgtacatgaacattctactctacggcgtcgga |
52127211 |
T |
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| Q |
216 |
ggcttagtcgtcgccggcatggcattgctcgtcgcgtttcaggagaagcttgtttacgttccggtcttaccaggtctcaccaaatcctacgctatcactc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52127212 |
ggcttagtcgtcgccggcatggcattgctcgtcgcgtttcaggagaagcttgtttacgttccggtcttaccaggtctcaccaaatcctacgctatcactc |
52127311 |
T |
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| Q |
316 |
cttctcgtctcagactcacctatgaagatatctggctttcttcttct |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52127312 |
cttctcgtctcagactcacctatgaagatatctggctttcttcttct |
52127358 |
T |
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