View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19985_high_6 (Length: 346)
Name: NF19985_high_6
Description: NF19985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19985_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 3399578 - 3399241
Alignment:
| Q |
11 |
cacagacacgatattttacagtaagacgtcgacaatagtaataa---attgagnnnnnnncaaatgattgaataaaatcacatgtgtatgtatattgtct |
107 |
Q |
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| T |
3399578 |
cacaaacacgatattttacagtaagacgtcgacaatagtaataataaattgagaaaaaaacaaatgattgaataaaatcacatgtgtatgtatattgtct |
3399479 |
T |
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| Q |
108 |
agcaccagcttgtgtcggatgcaaaacacaccctcaatatgaagtgtcgatgctacctagctttctagcaagcaaggaaaatgaagaacattttctctaa |
207 |
Q |
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| T |
3399478 |
agcaccagcttgtgtcggatgcaaaacacaccctcaatatgaagtgtcgatgctacctagctttctagcaagcaaggaaaatgaagaacattttctctaa |
3399379 |
T |
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| Q |
208 |
cttttctcagcnnnnnnnacttcacatgcagggaacatatactattgtgggaatgattttgaagtaccaaagaacaggcagaattatatttggtactgat |
307 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3399378 |
cttttctcagctttttttacttcacatgcagggaacatatactattgtgggaatgattttgaagtaccaaagaacaggcagaattatatttggtactgat |
3399279 |
T |
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| Q |
308 |
tctttgcaggagatgcaaaagctgagacttttaaaact |
345 |
Q |
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| T |
3399278 |
tctttgcaggagatgcaaaagctgagacttttaaaact |
3399241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 73 - 345
Target Start/End: Original strand, 31175045 - 31175313
Alignment:
| Q |
73 |
gattgaataaaatcacatgtgtatgtatattgtctagcaccagcttgtgtcggatgcaaaacacaccctcaatatgaagtgtcgatgctacctagctttc |
172 |
Q |
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| T |
31175045 |
gattgaataaaatcacatgtgtat----attgtctggcaccaacttgtgtcggatgcaaaatacgtcctcaatatgaagtgtcgatgctacctagctttc |
31175140 |
T |
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| Q |
173 |
tagcaagcaaggaaaatgaagaacattttctctaacttttctcagcnnnnnnnacttcacatgcagggaacatatactattgtgggaatgattttgaagt |
272 |
Q |
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| T |
31175141 |
tagcaagcaaggaaaatgaaaaacattttcccttacttttctcagctttttttacttcacatgcagggaacagatactattgagggaatgattttgaagt |
31175240 |
T |
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| Q |
273 |
accaaagaacaggcagaattatatttggtactgattctttgcaggagatgcaaaagctgagacttttaaaact |
345 |
Q |
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| T |
31175241 |
gccaaagaacaggcaggattatatttggtactaattctttccaggagatgcaaaagctgaggcttttaaaact |
31175313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 345
Target Start/End: Complemental strand, 8372508 - 8372389
Alignment:
| Q |
226 |
acttcacatgcagggaacatatactattgtgggaatgattttgaagtaccaaagaacaggcagaattatatttggtactgattctttgcaggagatgcaa |
325 |
Q |
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||||| |||| |||||||| | ||| ||| ||| |||||||||||| |||||||||||||||||| ||||| ||| || |||| ||||||||| || |
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| T |
8372508 |
acttctcatgtagggaacaaaaactgttgagggtttgattttgaagtggcaaagaacaggcagaatttgctttggcactaatgctttccaggagatggaa |
8372409 |
T |
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| Q |
326 |
aagctgagacttttaaaact |
345 |
Q |
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|| ||||| ||||||||||| |
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| T |
8372408 |
aaactgaggcttttaaaact |
8372389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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