View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19985_high_8 (Length: 328)
Name: NF19985_high_8
Description: NF19985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19985_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 21564835 - 21565149
Alignment:
| Q |
10 |
ccacagagccagcagtcttacccctcaaagaccacaatctcttgctcgaaaaccccctccttcctttaactacccacaaatcccttcaatatgcccattt |
109 |
Q |
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| T |
21564835 |
ccacagagccagcagtcttacccctcaaagaccacaatctct-gctcgaaaacccccttcttcctttaactatccacaaatcccttcaatatgcccattt |
21564933 |
T |
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| Q |
110 |
ctagcattaatcaatctaataaaaccttaaatttaatctattaaatccaaatcattttgttgtcctaaaatggatggaaaaattattctagtttcagtta |
209 |
Q |
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| T |
21564934 |
ctagcattaatcaatctaataaaaccttaaatttaatctattaaatccaaatcattttgttgtcctaaaatagatggaaaaattat--tagtttcagtta |
21565031 |
T |
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| Q |
210 |
tttaaagaaaagaagtgaccattgtgcaattgcagattgcattgaaatttgttaagaatcgaacatctagcaaactgtctctgcaagattgagttggttc |
309 |
Q |
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| T |
21565032 |
tttggagaaaagaagtgaccattgtgcaatcgcagattgcattgaaatttgttaagaatcaaacatctagcaaactgtctctacaagattgagttggttc |
21565131 |
T |
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| Q |
310 |
tttgggtttcacacccag |
327 |
Q |
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| T |
21565132 |
tttgggtttaacatccag |
21565149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 13415022 - 13414921
Alignment:
| Q |
137 |
taaatttaatctattaaatccaaatcattttgttgtcctaaaatggatggaaaaattattctagtttcagttatttaaagaaaagaagtgaccattgtgc |
236 |
Q |
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|||||||||| ||||||||||||| ||| ||| ||| | |||| |||||| | ||||||||| | |||||| |||||||||||| || |||||||| |
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| T |
13415022 |
taaatttaatttattaaatccaaaatattatgtcgtctaacaatgaatggaagagagattctagttccggttattcaaagaaaagaagcgatcattgtgc |
13414923 |
T |
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| Q |
237 |
aa |
238 |
Q |
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| T |
13414922 |
aa |
13414921 |
T |
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