View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19986_high_5 (Length: 283)
Name: NF19986_high_5
Description: NF19986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19986_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 1567265 - 1567517
Alignment:
| Q |
12 |
aatactatgcttgctattggctatcttccctatactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatcatggtcatactc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567265 |
aatactatgcttgctattggctatcttccctatactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatcatggtcatactc |
1567364 |
T |
|
| Q |
112 |
gtccctcttgttttctttattcaattaaggcagctttatattagttcaatcccccctgttgacaacagaatctttgggatcttattcatacttttgctat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567365 |
gtccctcttgttttctttattcaattaaggcagctttatattagttcaatcccccctgttgacaacagaatctttgggatcttattcatacttttgctat |
1567464 |
T |
|
| Q |
212 |
caactgcaatttcagtcatagaagttggttttttctcatggactgctgctagc |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567465 |
caactgcaatttcagtcatagaagttggttttttctcatggactgctgctagc |
1567517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 1456080 - 1455828
Alignment:
| Q |
12 |
aatactatgcttgctattggctatcttccctatactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatcatggtcatactc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1456080 |
aatactatgcttgctattggctatcttccctatgctaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatcatggtcatactc |
1455981 |
T |
|
| Q |
112 |
gtccctcttgttttctttattcaattaaggcagctttatattagttcaatcccccctgttgacaacagaatctttgggatcttattcatacttttgctat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1455980 |
gtccctcttgttttctttattcaattaaggcagctttatattagttcaatcccccctgttgacaacagaatctttgggatcttattcatacttttgctat |
1455881 |
T |
|
| Q |
212 |
caactgcaatttcagtcatagaagttggttttttctcatggactgctgctagc |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1455880 |
caactgcaatttcagtcatagaagttggttttttctcatggactgctgctagc |
1455828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 1555773 - 1556025
Alignment:
| Q |
12 |
aatactatgcttgctattggctatcttccctatactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatcatggtcatactc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1555773 |
aatactatgcttgctattggctatcttccctgtactaaagatatcatcagatggtcgtaactttatggcgaaatatgagaatatcatcatggtcatactc |
1555872 |
T |
|
| Q |
112 |
gtccctcttgttttctttattcaattaaggcagctttatattagttcaatcccccctgttgacaacagaatctttgggatcttattcatacttttgctat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1555873 |
gtccctcttgttttctttattcaattaaggctggcggatattagttcaatgagccctgttgacaacagaatctttgggatcttattcataattttgctat |
1555972 |
T |
|
| Q |
212 |
caactgcaatttcagtcatagaagttggttttttctcatggactgctgctagc |
264 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1555973 |
caaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagc |
1556025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 1461189 - 1460937
Alignment:
| Q |
12 |
aatactatgcttgctattggctatcttccctatactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatatcatcatggtcatactc |
111 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1461189 |
aatattatgtttgctattggctatcttccctgtactaaagatatcatcagatggtcgtaactttatggcgaaatatgagaatatcatcatggtcatactc |
1461090 |
T |
|
| Q |
112 |
gtccctcttgttttctttattcaattaaggcagctttatattagttcaatcccccctgttgacaacagaatctttgggatcttattcatacttttgctat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1461089 |
gtccctcttgttttctttattcaattaaggctggcggatattagttcaatgagccctgttgacaacagaatctttgggatcttattcataattttgctat |
1460990 |
T |
|
| Q |
212 |
caactgcaatttcagtcatagaagttggttttttctcatggactgctgctagc |
264 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1460989 |
caaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagc |
1460937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 264
Target Start/End: Complemental strand, 1454509 - 1454310
Alignment:
| Q |
65 |
gtcgtaactttatggcaaaatatgagaatatcatcatggtcatactcgtccctcttgttttctttattcaattaaggcagctttatattagttcaatccc |
164 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| | || | || || | |
|
|
| T |
1454509 |
gtcgtaacttcatggcaaaacatgagaatatcatcatggtcatactcgtccctctttatttatttattcaatttgggctgtgttctgttgcgataacctt |
1454410 |
T |
|
| Q |
165 |
ccctgttgacaacagaatctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagttggttttttctcatggactgctgctagc |
264 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| ||| || ||| | |||| ||||||||||||||||| || ||||||||||||||| ||||||| |
|
|
| T |
1454409 |
ccctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagc |
1454310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 1430167 - 1430084
Alignment:
| Q |
12 |
aatactatgcttgctattggctatcttccctatactaaagatatcatcagatggtcgtaactttatggcaaaatatgagaatat |
95 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| ||||||| | ||||| ||||| ||||| |||||||||||| ||||||| |
|
|
| T |
1430167 |
aatactatgcttggtattggttatcttccctaccctaaagacaacatcatatggtgcaaacttcatggcaaaatatcagaatat |
1430084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 2164326 - 2164278
Alignment:
| Q |
173 |
acaacagaatctttgggatcttattcatacttttgctatcaactgcaat |
221 |
Q |
| |
|
||||||| ||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
2164326 |
acaacagcatctttggggtcttattcataattctgctatcaactgcaat |
2164278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 2162105 - 2162050
Alignment:
| Q |
181 |
atctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagt |
236 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| |||||| ||| | |||||||| |
|
|
| T |
2162105 |
atctttgggatcttattcatacttcttctatcaagtgcaatatcatttatagaagt |
2162050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 1754212 - 1754131
Alignment:
| Q |
181 |
atctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagttggttttttctcatggactgctgcta |
262 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||| | ||||||| |||||||| |
|
|
| T |
1754212 |
atctttgggatcttattcatacttggactatcaagtgcaatttcagtcatggaagttagttttgtatcatggattgctgcta |
1754131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 1750189 - 1750092
Alignment:
| Q |
165 |
ccctgttgacaacagaatctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagttggttttttctcatggactgctgcta |
262 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||| ||||| ||||||| ||||| |||| || |||||||| ||| ||| |||||||||||||||| |
|
|
| T |
1750189 |
ccctattgataacagcgtctttgggatcttattcttacttgaactatcaagtgcaacttcaatcgtagaagttagttatttatcatggactgctgcta |
1750092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University