View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19986_low_2 (Length: 451)
Name: NF19986_low_2
Description: NF19986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19986_low_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Original strand, 48904512 - 48904961
Alignment:
| Q |
10 |
ataatactcgtcaaaaactaaataaataaattgtttaatacaattgtgttattatagttaacatacttaatcattaaattacgaaatacttctttttaaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48904512 |
ataatactcgtcaaaaactaaataaataaattgtttaatacaattgtattattatagttaacatacttaatcattaaattacgaaatacttctctttaaa |
48904611 |
T |
|
| Q |
110 |
tcagatgtaaagttatagtagtatcttcatcatcttcatcagttatgaatatcttccgccttctatagaagtaactctaaaaattgcaatgtataattgc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48904612 |
ccagatgtaaagttatagtagtatcttcatcatcttcatcggttatgaatatcctccgccttctatagaagtaactctaaaaattgcaatgtataattgc |
48904711 |
T |
|
| Q |
210 |
ccttaaataataactttatatgaaacttgagtattcaatgtattgaattgaattatttgactttttaaatgaatgatttctt--------aatccttgaa |
301 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48904712 |
ccttaaataataactttatatgaaacttgaatattcaatgtattcagttgaattatttgactttttaaatgaatgatttcttaatctttgaatccttgaa |
48904811 |
T |
|
| Q |
302 |
gagtgccctttatcaagaccctataataaaatataaaacaaattaaagcatagtgttttcctgtcatggcttcacctgatataattgtatgaatgtgacg |
401 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48904812 |
gagtgccctttatcaagaccctataataaaatacaaaacaaattaaagcacagtgctttcctggcatggcttcacctgatataattgtatgaatgtgacg |
48904911 |
T |
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| Q |
402 |
actttttctcctttcatttaattatctcctctcatgaaaaccactcaata |
451 |
Q |
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| T |
48904912 |
actttttctcctttcatttaattatctcctctcatgaaaaccactcaata |
48904961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 441
Target Start/End: Complemental strand, 15293393 - 15292963
Alignment:
| Q |
10 |
ataatactcgtcaaaaactaaataaataaattgtttaatacaattgtgttattatagttaacatacttaatcattaaattacgaaatacttctttttaaa |
109 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||||||| |||||| |
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| T |
15293393 |
ataatacttgtcaaaaactaaataaataaattgtttaatacaattgtatttttatatttaacatacttaatcat-aaattaagaaatacttctctttaaa |
15293295 |
T |
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| Q |
110 |
tcagatgtaaagttatagtagtatcttcatcatcttcatcagttatgaatatcttccgcc-ttctatagaagtaactctaaaaattgcaatgtataattg |
208 |
Q |
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| T |
15293294 |
ccacatgtaatgttatagtagtatcaacattatcttcatcggttatgaatatcttccgcccttcaatagaaataactctaaaaattgcaatgtataatta |
15293195 |
T |
|
| Q |
209 |
cccttaaataataactttatatgaaacttgagtattcaatgtattgaattgaattatttgactttttaaatgaatgatttctt--------aatccttga |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
15293194 |
cccttaaataataactttatatgaaacttgag---------tattaaattgaattatttgactatttaaatgaatgatttcttaatctttgaatccttga |
15293104 |
T |
|
| Q |
301 |
agagtgccctttatcaagaccctataataaaatataaaacaaattaaagcatagtgttttcctgtcatggcttcacctgatataattgtatgaatgtgac |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15293103 |
agagtgccctttatcaagaccctataataaaatacaaaacaaattaaagcatagtgctttcctgtcatggcttcacctgatataattgtatgaatgtgac |
15293004 |
T |
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| Q |
401 |
gactttttctcctttcatttaattatctcctctcatgaaaa |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
15293003 |
gactttttctcctttcatttaattatctcctctcatgaaaa |
15292963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 441
Target Start/End: Complemental strand, 7812356 - 7811926
Alignment:
| Q |
10 |
ataatactcgtcaaaaactaaataaataaattgtttaatacaattgtgttattatagttaacatacttaatcattaaattacgaaatacttctttttaaa |
109 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||||| |||||| |
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| T |
7812356 |
ataatacttgtcaaaaactaaataaataaattgtttaatacaattgtatttttatagttaacatacttaatcat-aaattatgaaatacttctctttaaa |
7812258 |
T |
|
| Q |
110 |
tcagatgtaaagttatagtagtatcttcatcatcttcatcagttatgaatatcttccgcc-ttctatagaagtaactctaaaaattgcaatgtataattg |
208 |
Q |
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|| |||||| |||||||||||||| |||| |||||| || ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
7812257 |
ccacatgtaatgttatagtagtatcatcattatcttcgtcggttatgaatatcttccgcccttctatagaaataactctaaaaattgcaatgtataattt |
7812158 |
T |
|
| Q |
209 |
cccttaaataataactttatatgaaacttgagtattcaatgtattgaattgaattatttgactttttaaatgaatgatttctt--------aatccttga |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7812157 |
cccttaaataataactttatatgaaacttgag---------tatttaattgaattatttgactttttaaatgaatgatttcttaatctttgaatccttga |
7812067 |
T |
|
| Q |
301 |
agagtgccctttatcaagaccctataataaaatataaaacaaattaaagcatagtgttttcctgtcatggcttcacctgatataattgtatgaatgtgac |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7812066 |
agagtgccctttatcaagaccctataataaaatacaaaacaaataaaagcatagtgctttcctgtcatggcttcacctgatataattgtatgaatgtgac |
7811967 |
T |
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| Q |
401 |
gactttttctcctttcatttaattatctcctctcatgaaaa |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7811966 |
gactttttctcctttcatttaattatctcctctcatgaaaa |
7811926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 27070653 - 27070593
Alignment:
| Q |
86 |
aattacgaaatacttctttttaaatcagatgtaaagttatagtagtatcttcatcatcttc |
146 |
Q |
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||||||||||||||| | |||| |||| || | |||||||||||| ||||||| ||||||| |
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| T |
27070653 |
aattacgaaatacttttctttagatcacatttgaagttatagtagcatcttcaccatcttc |
27070593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 27150739 - 27150679
Alignment:
| Q |
86 |
aattacgaaatacttctttttaaatcagatgtaaagttatagtagtatcttcatcatcttc |
146 |
Q |
| |
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||||||||||||||| | |||| |||| || | |||||||||||| ||||||| ||||||| |
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| T |
27150739 |
aattacgaaatacttttctttagatcacatttgaagttatagtagcatcttcaccatcttc |
27150679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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