View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19986_low_4 (Length: 296)

Name: NF19986_low_4
Description: NF19986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19986_low_4
NF19986_low_4
[»] chr8 (12 HSPs)
chr8 (10-277)||(2055501-2055768)
chr8 (87-277)||(2051722-2051911)
chr8 (198-277)||(2058893-2058972)
chr8 (201-275)||(1948257-1948331)
chr8 (99-151)||(2058835-2058887)
chr8 (225-273)||(10769373-10769421)
chr8 (218-275)||(2034637-2034694)
chr8 (212-271)||(2047952-2048011)
chr8 (202-275)||(2029703-2029776)
chr8 (11-64)||(2058389-2058442)
chr8 (240-275)||(2038737-2038772)
chr8 (242-275)||(2023297-2023330)
[»] chr2 (3 HSPs)
chr2 (234-275)||(28742196-28742237)
chr2 (243-275)||(28699563-28699595)
chr2 (243-275)||(28735063-28735095)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 2055501 - 2055768
Alignment:
Q  10 gagcagagacttctcatcggacatattagattgaccaaacccatcacggtctattcaaattgataatagtaattgattcatgtgtaatcaggttcgatcg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2055501 gagcagagacttctcatcggacatattagattgaccaaacccatcacggtctattcaaattgataatagtaattgattcgtgtgtaatcaggttcgatcg 2055600  T
Q  110 tgattgaaccaatattaaaccatgaccttaaggtctcattgattcgatttttggtcaggtttgtaagatattaattgaaaggattggttaatagatgtaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||| |||||||||||||||    
T  2055601 tgattgaaccaatattaaaccatgaccttaaggtctcattgattcgattcttggtcaggtttttaagatattatttgaaaggatcggttaatagatgtaa 2055700  T
Q  210 acacatagctaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgttgta 277  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2055701 acacataactaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgttgta 2055768  T

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Target: chr8; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 87 - 277
Target Start/End: Original strand, 2051722 - 2051911
Alignment:
Q  87 tcatgtgtaatcaggttcgatcgtgattgaaccaatattaaaccatgaccttaaggtctcattgattcgatttttggtcaggtttgtaagatattaattg 186  Q
    |||||||| | |||| ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  2051722 tcatgtgtcaccaggatcgatcgtgtttgaaccaatattaaaccatgacctaaaggtctaattgattcgatttttggtcaggtttttaagatattaattg 2051821  T
Q  187 aaaggattggttaatagatgtaaacacatagctaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgttgta 277  Q
     ||||| | | ||||||||||||||| | | |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  2051822 gaagga-tcgataatagatgtaaacatacaactaattatttgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgta 2051911  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 2058893 - 2058972
Alignment:
Q  198 taatagatgtaaacacatagctaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgttgta 277  Q
    |||||| |||||||| ||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2058893 taataggtgtaaacatatatctaattatttgattgtttgaattgtagcttataacaaatgacaaattcaagagtgttgta 2058972  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 1948331 - 1948257
Alignment:
Q  201 tagatgtaaacacatagctaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgttg 275  Q
    |||||| ||||| |||||||||| |||  ||||||||  ||||||||||||||||||||||||||||||||||||    
T  1948331 tagatgcaaacatatagctaattattttcttgtttgatttgtagcttataacaaatgacaaattcaagagtgttg 1948257  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 2058835 - 2058887
Alignment:
Q  99 aggttcgatcgtgattgaaccaatattaaaccatgaccttaaggtctcattga 151  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  2058835 aggtccgatcgtgattgaaccaatattaaaccatgacctaaaggtctcattga 2058887  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 10769373 - 10769421
Alignment:
Q  225 tttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgt 273  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  10769373 tttgcttgtttgaagtgtagcttataacaaatgacaaattcaagagtgt 10769421  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 2034637 - 2034694
Alignment:
Q  218 ctaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgttg 275  Q
    |||||| |||||||| || || ||||||||||||||||||||| ||||||||||||||    
T  2034637 ctaattatttgtttgcttcaattgtagcttataacaaatgacagattcaagagtgttg 2034694  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 2047952 - 2048011
Alignment:
Q  212 acatagctaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagt 271  Q
    |||||||||||| |||||||||||    ||||||||||||||||||||| ||||||||||    
T  2047952 acatagctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagt 2048011  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 2029703 - 2029776
Alignment:
Q  202 agatgtaaacacatagctaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgttg 275  Q
    |||||||| || ||| |||||| |||||||||||    ||||||||||||||||||| | ||||||||||||||    
T  2029703 agatgtaagcatataactaattatttgtttgtttaccttgtagcttataacaaatgatagattcaagagtgttg 2029776  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 2058389 - 2058442
Alignment:
Q  11 agcagagacttctcatcggacatattagattgaccaaacccatcacggtctatt 64  Q
    |||| |||| |||||||||||||| ||||||||||||||||||||  |||||||    
T  2058389 agcaaagacctctcatcggacatagtagattgaccaaacccatcatagtctatt 2058442  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 2038737 - 2038772
Alignment:
Q  240 tgtagcttataacaaatgacaaattcaagagtgttg 275  Q
    ||||||||||||||||||||| ||||||||||||||    
T  2038737 tgtagcttataacaaatgacagattcaagagtgttg 2038772  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 2023297 - 2023330
Alignment:
Q  242 tagcttataacaaatgacaaattcaagagtgttg 275  Q
    |||||||| |||||||||||||||||||||||||    
T  2023297 tagcttattacaaatgacaaattcaagagtgttg 2023330  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 28742237 - 28742196
Alignment:
Q  234 ttgaactgtagcttataacaaatgacaaattcaagagtgttg 275  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  28742237 ttgaactgcagcttataacaaatgacagattcaagagtgttg 28742196  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 28699595 - 28699563
Alignment:
Q  243 agcttataacaaatgacaaattcaagagtgttg 275  Q
    |||| ||||||||||||||||||||||||||||    
T  28699595 agctgataacaaatgacaaattcaagagtgttg 28699563  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 28735095 - 28735063
Alignment:
Q  243 agcttataacaaatgacaaattcaagagtgttg 275  Q
    |||||||||||||||| ||||||||||||||||    
T  28735095 agcttataacaaatgataaattcaagagtgttg 28735063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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