View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19987_low_3 (Length: 306)

Name: NF19987_low_3
Description: NF19987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19987_low_3
NF19987_low_3
[»] chr3 (15 HSPs)
chr3 (7-162)||(8547286-8547441)
chr3 (191-291)||(8544002-8544102)
chr3 (191-291)||(8547470-8547570)
chr3 (93-162)||(8543901-8543970)
chr3 (7-73)||(29672747-29672813)
chr3 (7-73)||(10567578-10567644)
chr3 (7-73)||(10570828-10570894)
chr3 (6-73)||(20283781-20283848)
chr3 (91-141)||(27904578-27904628)
chr3 (91-141)||(28520433-28520483)
chr3 (194-291)||(27904391-27904490)
chr3 (91-141)||(28477779-28477829)
chr3 (91-141)||(28505186-28505236)
chr3 (191-265)||(28520557-28520631)
chr3 (31-73)||(21560143-21560185)
[»] chr7 (2 HSPs)
chr7 (7-73)||(47018654-47018720)
chr7 (7-73)||(24189603-24189669)
[»] chr5 (7 HSPs)
chr5 (7-73)||(36100215-36100281)
chr5 (7-73)||(38486416-38486482)
chr5 (6-73)||(6751302-6751371)
chr5 (20-73)||(5918056-5918109)
chr5 (20-73)||(35417274-35417327)
chr5 (20-73)||(5911108-5911161)
chr5 (7-69)||(41194091-41194154)
[»] chr1 (4 HSPs)
chr1 (7-73)||(16860334-16860400)
chr1 (19-73)||(26337751-26337805)
chr1 (11-62)||(40772361-40772412)
chr1 (45-73)||(19406099-19406127)
[»] chr4 (6 HSPs)
chr4 (17-73)||(47113243-47113299)
chr4 (7-73)||(39220271-39220338)
chr4 (7-73)||(39226797-39226864)
chr4 (22-73)||(40052566-40052617)
chr4 (22-73)||(40053669-40053720)
chr4 (20-73)||(236239-236292)
[»] chr8 (1 HSPs)
chr8 (11-70)||(21593425-21593484)
[»] chr2 (1 HSPs)
chr2 (7-73)||(20471530-20471599)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 8547286 - 8547441
Alignment:
Q  7 aaatatgctttagttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggatccaaatctctaaatacctaatttaccttatttc 106  Q
    ||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8547286 aaatatgctctagttttctagttcctctactcaaaggttgagggtaagaattggtctcggtgtggatctaaatctctaaatacctaatttaccttatttc 8547385  T
Q  107 cagcagttgtatgaacaatcttcccctttctccaaaagcagaagagattataacag 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547386 cagcagttgtatgaacaatcttcccctttctccaaaagcagaagagattataacag 8547441  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 191 - 291
Target Start/End: Original strand, 8544002 - 8544102
Alignment:
Q  191 acccaactcatttgtgttttagtgacaaatttatttatagtccaaaagaaaaacagtagaagcaatcgaataaagtaaagtataatggaaaggaacctcc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8544002 acccaactcatttgtgttttagtgacaaatttatttatagtccaaaagaaaaacagtagaagcaatcgaataaagtaaagtataatggaaaggaacctcc 8544101  T
Q  291 t 291  Q
    |    
T  8544102 t 8544102  T

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Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 191 - 291
Target Start/End: Original strand, 8547470 - 8547570
Alignment:
Q  191 acccaactcatttgtgttttagtgacaaatttatttatagtccaaaagaaaaacagtagaagcaatcgaataaagtaaagtataatggaaaggaacctcc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547470 acccaactcatttgtgttttagtgacaaatttatttatagtccaaaagaaaaacagtagaagcaatcgaataaagtaaagtataatggaaaggaacctcc 8547569  T
Q  291 t 291  Q
    |    
T  8547570 t 8547570  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 8543901 - 8543970
Alignment:
Q  93 atttaccttatttccagcagttgtatgaacaatcttcccctttctccaaaagcagaagagattataacag 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8543901 atttaccttatttccagcagttgtatgaacaatcttcccctttctccaaaagcataagagattataacag 8543970  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 29672813 - 29672747
Alignment:
Q  7 aaatatgctttagttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29672813 aaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggat 29672747  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 10567578 - 10567644
Alignment:
Q  7 aaatatgctttagttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||    
T  10567578 aaatatgctctagttttctagttccactactcaaaggttgagagtaaaaattggtctcggtgtggat 10567644  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 10570828 - 10570894
Alignment:
Q  7 aaatatgctttagttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||    
T  10570828 aaatatgctctagttttctagttccactactcaaaggttgagagtaaaaattggtctcggtgtggat 10570894  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 20283781 - 20283848
Alignment:
Q  6 aaaatatgctttagttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    |||||||||| ||||||||| || | |||||||||||| |||||||||||||||||||||||||||||    
T  20283781 aaaatatgctctagttttcttgttcaactactcaaaggctgagggtaagaattggtctcggtgtggat 20283848  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 27904628 - 27904578
Alignment:
Q  91 taatttaccttatttccagcagttgtatgaacaatcttcccctttctccaa 141  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27904628 taatttaccttatttccagcagtagtatgaacaatcttcccctttctccaa 27904578  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 28520433 - 28520483
Alignment:
Q  91 taatttaccttatttccagcagttgtatgaacaatcttcccctttctccaa 141  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28520433 taatttaccttatttccagcagtagtatgaacaatcttcccctttctccaa 28520483  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 291
Target Start/End: Complemental strand, 27904490 - 27904391
Alignment:
Q  194 caactcatttgtgttttagtgacaaatttatttatagtccaaaagaaaaacagtagaagcaatcgaataaagtaaagta---taatggaaaggaacctcc 290  Q
    ||||||||||||||| ||| ||||||||||||| |||||| ||||| ||| || |||||  ||||||||||||||||||   || |||||||||||||||    
T  27904490 caactcatttgtgttgtagcgacaaatttatttttagtcc-aaagagaaaaagaagaagggatcgaataaagtaaagtaaggtactggaaaggaacctcc 27904392  T

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Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 28477779 - 28477829
Alignment:
Q  91 taatttaccttatttccagcagttgtatgaacaatcttcccctttctccaa 141  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  28477779 taatttaccttatttccagcagcagtatgaacaatcttcccctttctccaa 28477829  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 28505186 - 28505236
Alignment:
Q  91 taatttaccttatttccagcagttgtatgaacaatcttcccctttctccaa 141  Q
    ||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  28505186 taatttaccttattttctgcagtagtatgaacaatcttcccctttctccaa 28505236  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 28520557 - 28520631
Alignment:
Q  191 acccaactcatttgtgttttagtgacaaatttatttatagtccaaaagaaaaacagtag-aagcaatcgaataaag 265  Q
    |||||||||||||||||| ||| |||||||||||||||| | | ||||||||| || || ||| ||||||||||||    
T  28520557 acccaactcatttgtgttgtagagacaaatttatttatatttc-aaagaaaaaaagaagaaaggaatcgaataaag 28520631  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 21560185 - 21560143
Alignment:
Q  31 cactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||    
T  21560185 cactattcaaagattgagggtaagaattggtctcggcgtggat 21560143  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 47018720 - 47018654
Alignment:
Q  7 aaatatgctttagttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  47018720 aaatatgctctagttttctagttccactactcaaaggttgagggtaagaattgatctcggtgtggat 47018654  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 24189603 - 24189669
Alignment:
Q  7 aaatatgctttagttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||||| ||||||||| || |||||| |||||| |||| ||||||||||||||| |||||||||    
T  24189603 aaatatgctctagttttcttgttccactaatcaaagattgaaggtaagaattggtcttggtgtggat 24189669  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 36100281 - 36100215
Alignment:
Q  7 aaatatgctttagttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36100281 aaatatgttctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggat 36100215  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 38486416 - 38486482
Alignment:
Q  7 aaatatgctttagttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38486416 aaatatgctctagtttttcagttccactactcaaaggttgagggtaagaattggtctcggtgtggat 38486482  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 6751302 - 6751371
Alignment:
Q  6 aaaatatgctttagttttct--agtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    |||||||||| ||||||| |  ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6751302 aaaatatgctctagttttttttagttccactactcaaaggttgagggtaagaattggtctcggtgtggat 6751371  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 5918109 - 5918056
Alignment:
Q  20 ttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5918109 ttttttagttccactactcaaaggttgagggtaagaattggtctcggtgtggat 5918056  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 35417327 - 35417274
Alignment:
Q  20 ttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35417327 ttttttagttccactactcaaaggttgagggtaagaattggtctcggtgtggat 35417274  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 5911161 - 5911108
Alignment:
Q  20 ttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||||||||||    
T  5911161 ttttttagttccactacttaaaggttgagggtaagaattggtctcggtgtggat 5911108  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 41194154 - 41194091
Alignment:
Q  7 aaatatgctttagtttt-ctagtcccactactcaaaggttgagggtaagaattggtctcggtgt 69  Q
    ||||||||| ||||||| || || ||||||||||||||||||| |||||||||| |||||||||    
T  41194154 aaatatgctctagtttttcttgttccactactcaaaggttgagagtaagaattgatctcggtgt 41194091  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 16860400 - 16860334
Alignment:
Q  7 aaatatgctttagttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  16860400 aaatatgctctagttttctagttccactactcaaaggttgagcgtaagaattggtctcggtgtggat 16860334  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 26337805 - 26337751
Alignment:
Q  19 gttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||| || |||||||| ||||||||||| |||||||||||||||||||||||    
T  26337805 gttttcttgttccactacttaaaggttgaggttaagaattggtctcggtgtggat 26337751  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 40772361 - 40772412
Alignment:
Q  11 atgctttagttttctagtcccactactcaaaggttgagggtaagaattggtc 62  Q
    ||||| ||||||| | || |||||||||||||||||||||||||||||||||    
T  40772361 atgctctagttttattgttccactactcaaaggttgagggtaagaattggtc 40772412  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 19406099 - 19406127
Alignment:
Q  45 tgagggtaagaattggtctcggtgtggat 73  Q
    |||||||||||||||||||||||||||||    
T  19406099 tgagggtaagaattggtctcggtgtggat 19406127  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 47113299 - 47113243
Alignment:
Q  17 tagttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47113299 tagttttttagttccactactcaaaggttgagggtaagaattggtctcggtgtggat 47113243  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 39220271 - 39220338
Alignment:
Q  7 aaatatgctttagtttt-ctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  39220271 aaatatgctctagtttttctagttccactactcaaaggttgagagtaagaattggtctcggtgtggat 39220338  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 39226797 - 39226864
Alignment:
Q  7 aaatatgctttagtttt-ctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  39226797 aaatatgctctagtttttctagttccactactcaaaggttgagagtaagaattggtctcggtgtggat 39226864  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 40052617 - 40052566
Alignment:
Q  22 ttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40052617 ttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggat 40052566  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 40053669 - 40053720
Alignment:
Q  22 ttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40053669 ttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggat 40053720  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 236239 - 236292
Alignment:
Q  20 ttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtggat 73  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  236239 ttttttagttccactactcaaaggttgagggtaagaattggtctcggtgtggat 236292  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 21593425 - 21593484
Alignment:
Q  11 atgctttagttttctagtcccactactcaaaggttgagggtaagaattggtctcggtgtg 70  Q
    ||||| ||||||||| || ||| ||||||||||||||| |||||||||||||||||||||    
T  21593425 atgctctagttttcttgttccaatactcaaaggttgagagtaagaattggtctcggtgtg 21593484  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 20471530 - 20471599
Alignment:
Q  7 aaatatgctttagttttctagtcccactactcaaaggttgaggg---taagaattggtctcggtgtggat 73  Q
    ||||||||| ||||||||| || ||||| ||||||||||||| |   |||||||||||| ||||||||||    
T  20471530 aaatatgctctagttttcttgttccactgctcaaaggttgagagtaataagaattggtcacggtgtggat 20471599  T

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