View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19988_high_11 (Length: 273)
Name: NF19988_high_11
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19988_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 29321303 - 29321547
Alignment:
| Q |
15 |
tcatcatctcaattgccgcgggaacaagaacatcttcatgcccatttgtagtgagcgatttgaacaagaagaccccatggtagaaagcatctaacatccc |
114 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29321303 |
tcatcatctcaattgccgtgggaacaaaaacatcttcatgcccatctgtagtgagcgatttgaacaagaagaccccaaggtagaaagcatctaacatccc |
29321402 |
T |
|
| Q |
115 |
agcagtaatacaattcttatcatcaacatcataccaaagaggatcatcaataacacacgacaacatgttcacagcaaccgtcactacccttctcacttcc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29321403 |
agcagtaatacaattcttatcatcaacatcataccaaagaggatcatcaataacacacgacaacatgttcacagcaaccgtaactacccttctcacttcc |
29321502 |
T |
|
| Q |
215 |
tcatgagaaagattttttatccaacttcccatctccttcaagttc |
259 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29321503 |
tcatgagaaagattttttatcaaacttcccatctccttcaagttc |
29321547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 29332602 - 29332707
Alignment:
| Q |
123 |
tacaattcttatcatcaacatcataccaaagaggatcatcaataacacacgacaacatgttcacagcaaccgtcactacccttctcacttcctcatgaga |
222 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||| |||||||| | |||||| |||||||||| |||| |
|
|
| T |
29332602 |
tacaattcttatcatccacatcataccaaagaggatcatcaataacacacgatagcatcttcatagcaaccgcaaataccctcttcacttcctccagaga |
29332701 |
T |
|
| Q |
223 |
aagatt |
228 |
Q |
| |
|
|||||| |
|
|
| T |
29332702 |
aagatt |
29332707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 29304198 - 29304303
Alignment:
| Q |
78 |
acaagaagaccccatggtagaaagcatctaacatcccagcagtaatacaattcttatcatcaacatcataccaaagaggatcatcaataacacacgacaa |
177 |
Q |
| |
|
|||||||||||||| | || |||||||| ||| |||||||||| || ||||| || || ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
29304198 |
acaagaagaccccacgataataagcatctgccattccagcagtaagacgattctcatggtccacatcataccaaagaggatcatcaacaatacacgacaa |
29304297 |
T |
|
| Q |
178 |
catgtt |
183 |
Q |
| |
|
|||||| |
|
|
| T |
29304298 |
catgtt |
29304303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 29295155 - 29295194
Alignment:
| Q |
123 |
tacaattcttatcatcaacatcataccaaagaggatcatc |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29295155 |
tacaattcttatcatcaacatcataccaaacaggatcatc |
29295194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University