View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19988_high_13 (Length: 253)
Name: NF19988_high_13
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19988_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 46359626 - 46359864
Alignment:
| Q |
5 |
aattattactgcctatgttaatgctggggaagtcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46359626 |
aattattactgcctatgttaatgctggggaagtcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatg |
46359725 |
T |
|
| Q |
105 |
tttggtttgacacattcaaaaggcatgctacatgtcaggaagatcttggaagaagccaaaaagcaggattgtaagttaatcattactttgctgtaccata |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46359726 |
tttggtttgacacattcaaaaggcatgctacatgtcaggaagatcttggaagaagccaaaaagcaggattgtaagttaatcattactttgctgtaccata |
46359825 |
T |
|
| Q |
205 |
cactcattgttggatattgcgagctagagaaatttgatg |
243 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46359826 |
cactcattgttggatattgcaagctagagaaatttgatg |
46359864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 44460827 - 44461065
Alignment:
| Q |
5 |
aattattactgcctatgttaatgctggggaagtcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatg |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44460827 |
aattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatg |
44460926 |
T |
|
| Q |
105 |
tttggtttgacacattcaaaaggcatgctacatgtcaggaagatcttggaagaagccaaaaagcaggattgtaagttaatcattactttgctgtaccata |
204 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44460927 |
tttggtttcccacgttcaaaaggtatgctacatatcaagaagatcttggaaaaagccaaaaagcaggattgtaagttaatcattactttgctgtaccata |
44461026 |
T |
|
| Q |
205 |
cactcattgttggatattgcgagctagagaaatttgatg |
243 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44461027 |
cactcattgttggatattgcaagctagagaaatttgatg |
44461065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 44468360 - 44468598
Alignment:
| Q |
5 |
aattattactgcctatgttaatgctggggaagtcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatg |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44468360 |
aattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatg |
44468459 |
T |
|
| Q |
105 |
tttggtttgacacattcaaaaggcatgctacatgtcaggaagatcttggaagaagccaaaaagcaggattgtaagttaatcattactttgctgtaccata |
204 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44468460 |
tttggtttcccacgttcaaaaggtatgctacatatcaagaagatcttggaaaaagccaaaaagcaggattgtaagttaatcattactttgctgtaccata |
44468559 |
T |
|
| Q |
205 |
cactcattgttggatattgcgagctagagaaatttgatg |
243 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44468560 |
cactcattgttggatattgcaagctagagaaatttgatg |
44468598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 34501857 - 34501682
Alignment:
| Q |
5 |
aattattactgcctatgttaatgctggggaagtcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatg |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||| |
|
|
| T |
34501857 |
aattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacatttgtgatcctcttatg |
34501758 |
T |
|
| Q |
105 |
tttggtttgacacattcaaaaggcatgctacatgtcaggaagatcttggaagaagccaaaaagcaggattgtaagt |
180 |
Q |
| |
|
|||||||| ||||||||||| || || ||||| | |||||||||||||| || ||||||| |||||||||||| |
|
|
| T |
34501757 |
tttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaagt |
34501682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 34501680 - 34501631
Alignment:
| Q |
193 |
tgctgtaccatacactcattgttggatattgcgagctagagaaatttgat |
242 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |||| ||||||||||| |
|
|
| T |
34501680 |
tgctgtaccatacgctcattgctggatattgcaggctacagaaatttgat |
34501631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 38604433 - 38604347
Alignment:
| Q |
144 |
aagatcttggaagaagccaaaaagcaggattgtaagttaatcattactttgctgtaccatacactcattgttggatattgcgagcta |
230 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||||||||||||| || ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
38604433 |
aagatcttggaagaagccagaaagaaggattctaagttaatcattgctctgctgtaccattcactcattgttggatattgcaagcta |
38604347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 40180053 - 40179993
Alignment:
| Q |
16 |
cctatgttaatgctggggaagtcggacaggttttggagatggtgatgctattggaaagtat |
76 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
40180053 |
cctatgttgatgctagggaaatcggacaagctttggagatggtgatgctattggaaagtat |
40179993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 38604572 - 38604482
Alignment:
| Q |
5 |
aattattactgcctatgttaatgctggggaagtcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaat |
95 |
Q |
| |
|
|||||||| ||||| |||||| ||| ||||| ||||| || ||||||||||||| |||||||||||||||| ||||| |||| | ||||| |
|
|
| T |
38604572 |
aattattagtgcctgtgttaaagctagggaaaccggacgggctttggagatggtgttgctattggaaagtataggtttatacactagtaat |
38604482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 41619732 - 41619814
Alignment:
| Q |
141 |
aggaagatcttggaagaagccaaaaagcaggattgtaagttaatcattactttgctgtaccatacactcattgttggatattg |
223 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||| |||||||||||| |||| |||||||||||||| || |||||||||| |
|
|
| T |
41619732 |
aggaaaatcttggaagaagccaaaaagaaccattttaagttaatcatccctttactgtaccatacactagtttttggatattg |
41619814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 40179921 - 40179852
Alignment:
| Q |
145 |
agatcttggaagaagccaaaaagcaggattgtaagttaatcattactttgctgtaccatacactcattgt |
214 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||||||| || ||||||| ||||||| |||||||| |
|
|
| T |
40179921 |
agatcttggaagaagccaaaaagaaggactctaagttaatcgttgctttgctctaccatatgctcattgt |
40179852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 41583987 - 41584038
Alignment:
| Q |
193 |
tgctgtaccatacactcattgttggatattgcgagctagagaaatttgatga |
244 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
41583987 |
tgctgtaccatacgctcattgatggatattgcaggctacagaaatttgatga |
41584038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University