View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19988_high_14 (Length: 253)
Name: NF19988_high_14
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19988_high_14 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 42868668 - 42868908
Alignment:
| Q |
13 |
aatataatcaactggtgaacacacagttcctccactgaacttatccactttcaacatcgacgcaaattacactctccataaatttatttgtttattgctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42868668 |
aatataatcaactggtgaacacacagttcctccactgaatttatccactttcaacatcgacgcaaattacactctccataaatttatttgtttattgctt |
42868767 |
T |
|
| Q |
113 |
ttatgtcaataattatgttaagaaaatgatcattttcaaaatccaagtgaaaacagatgagtcagttcatttccaacatataaagaataaaaatggagag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
42868768 |
ttatgtcaataattatgttaagaaaatgatcattttcaaaatccaagtgaaaacagatgagtcggtaaatttccaacatataaagaataaaaatggagag |
42868867 |
T |
|
| Q |
213 |
acacgtcattttaatacctgataaggtcttaaatcttaatt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42868868 |
acacgtcattttaatacctgataaggtcttaaatcttaatt |
42868908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 18855983 - 18856017
Alignment:
| Q |
142 |
tcattttcaaaatccaagtgaaaacagatgagtca |
176 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
18855983 |
tcattttcaaaatccaagtgaaaacatatgagtca |
18856017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University