View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19988_high_18 (Length: 247)
Name: NF19988_high_18
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19988_high_18 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 12533281 - 12533043
Alignment:
| Q |
1 |
aagacagctacttcattttatatttgtggagggctcgagctaaattcctgttacatgtatcatgtgctcaattatagctactcagcatccacaaatgaaa |
100 |
Q |
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||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
12533281 |
aagacagctacttcagtttatatttgtgcagggctcgaggtaaattcctgttacatgtgttgtgtgctcaattatagctactcagcatccacaaatgaaa |
12533182 |
T |
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| Q |
101 |
ttgaagataagcattggtataagtagtgtgctcaatgtaggcctacagctgatgaaattactcctttcagttctcaatgtaggttggcttacgctatgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
12533181 |
ttgaagataagcattggtataagtagtgtgctcagtgtaggcctacacctgatgaaataactcctttcagttctcaatgtacgttggcttacgctatgtg |
12533082 |
T |
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| Q |
201 |
atcaggacctcaacattcctaaaaaattagcttcttctc |
239 |
Q |
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| T |
12533081 |
ataaggacctcaacattcctaaaaaattagcttcttctc |
12533043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 12534269 - 12534156
Alignment:
| Q |
1 |
aagacagctacttcattttatatttgtggagggctcgagctaaattcctgttacatgtatcatgtgctcaattatagctactcagcatccacaaatgaaa |
100 |
Q |
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||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
12534269 |
aagacagctacttcagtttatatttgtgcagggctcgaggtaaattcctgttacatgtgttgtgtgctcaattatagctactcagcatccacaaatgaaa |
12534170 |
T |
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| Q |
101 |
ttgaagataagcat |
114 |
Q |
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| T |
12534169 |
ttgaagataagcat |
12534156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 30184 - 30419
Alignment:
| Q |
1 |
aagacagctacttcattttatatttgtggagggctcgagctaaattcctgttacatgtatcatgtgctcaattatagctactcagcatccacaaatgaaa |
100 |
Q |
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||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
30184 |
aagacagctacttcagtttatatttgtgcagggctcgaggtaaattcctgttacatgtgttgtgtgctcaattatagctactcagcatccacaaatgaaa |
30283 |
T |
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| Q |
101 |
ttgaagataagcattggtataagtagtgtgctcaatgtaggcctacagctgatgaaattactcctttcagttctcaatgtaggttggcttacgctatgtg |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
30284 |
ttgaagataagcactggtataagtagtgtgctcaatgtaggcctacacctgatgaaataactcctttcagttctcaatgtaggctggcttacgctatgtg |
30383 |
T |
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| Q |
201 |
atcaggacctcaacattcctaaaaaattagcttctt |
236 |
Q |
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|| ||||||||||||||||||||||||||||||||| |
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| T |
30384 |
ataaggacctcaacattcctaaaaaattagcttctt |
30419 |
T |
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