View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19988_high_19 (Length: 237)
Name: NF19988_high_19
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19988_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26941922 - 26942142
Alignment:
| Q |
1 |
tgaataagatgtgtggataatgtgttaattgttgtaacgttaatgaataattattgttagtttcgtatttgatcatattgaatccaacaacggggcagtt |
100 |
Q |
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| T |
26941922 |
tgaataagatgtgtggataatgtgttaattgttgtaacgttaatgaataattgttgttagtctcgtatttggtcatattgaatccaacaacggggcagtt |
26942021 |
T |
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| Q |
101 |
gactacaaagttactggcctagagcggacaata-tcaaggatgcctcctaaaaactgcacacccaagcatgtcgagtgatcaaatcaggattgcatgatg |
199 |
Q |
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| T |
26942022 |
cactataaagttactagcctagagcggacaacattcaaggatg-ctcctaaaaactgcacacccaagcatgtcgagtgatcaaatcaggattgcgtgatg |
26942120 |
T |
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| Q |
200 |
aagatcatataatgatatgtct |
221 |
Q |
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| T |
26942121 |
aagatcatatgatgatatgtct |
26942142 |
T |
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Back To:
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 23406063 - 23406110
Alignment:
| Q |
174 |
agtgatcaaatcaggattgcatgatgaagatcatataatgatatgtct |
221 |
Q |
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| T |
23406063 |
agtgatcaaatcatgattgtgtgatgaagatcatataatgatttgtct |
23406110 |
T |
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