View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19988_high_4 (Length: 510)
Name: NF19988_high_4
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19988_high_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 35098158 - 35098658
Alignment:
| Q |
1 |
ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35098158 |
ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa |
35098257 |
T |
|
| Q |
101 |
gcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgttattatgttgcttaaaaattatttgcgtccttgagagtgttggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
35098258 |
gcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgttattatgttgcttaaaaattattcgcgtccttcagagtgttggt |
35098357 |
T |
|
| Q |
201 |
tgtaatgcttaccttttgtgtgtgatgtgggt----gtgagttatcatgtcatatgtgaaatgttgctgaataaataaaattattaattctccaattttt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
35098358 |
tgtaatgcttaccttttgtgtgtgatgtgggtgtgagtgagttatcatgtcatatgtgaaatgttgctgaataaat-aaattattaattctccaattttt |
35098456 |
T |
|
| Q |
297 |
ccttcaagttcactggagtattgattcttttgcaatccttcataatttcccttgtgtatttcatttggcatattaagactcatttgttatcttgcctaac |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35098457 |
ccttcaagttcactggagtattgattcttttgcaatccttcataatttcccttgtgtatttcatttggcatattaagactcatttgttatcttgcctaac |
35098556 |
T |
|
| Q |
397 |
ttccattcctagacaacgtggtcatcacactgagctctatgatctcaaatgcttggagcagtaaatcatgaataatgctaggattctgattgatcttatt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35098557 |
ttccattcctagacaacgtggtcatcacactgagctctatgatctcagatgcttggagcagtaaatcatgaataatgctaggattctgattgatcttatt |
35098656 |
T |
|
| Q |
497 |
tt |
498 |
Q |
| |
|
|| |
|
|
| T |
35098657 |
tt |
35098658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 35097869 - 35098034
Alignment:
| Q |
1 |
ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35097869 |
ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa |
35097968 |
T |
|
| Q |
101 |
gcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgttattatgttg |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35097969 |
gcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgttattatgttg |
35098034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 35072813 - 35072678
Alignment:
| Q |
1 |
ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa |
100 |
Q |
| |
|
||||||| |||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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|
| T |
35072813 |
ggaggtttagataaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaa |
35072714 |
T |
|
| Q |
101 |
gcctgatgttaagtccattgaaatctctggttgaac |
136 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
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|
| T |
35072713 |
acctgatgttaagtccatcgaaatctctggttgaac |
35072678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 36296586 - 36296449
Alignment:
| Q |
1 |
ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa |
100 |
Q |
| |
|
|||||||||||||||| || ||||| || ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |
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|
| T |
36296586 |
ggaggttcagattgcccgaaaatgccaagatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgttccaaaagaagaagttaagaa |
36296487 |
T |
|
| Q |
101 |
gcctgatgttaagtccattgaaatctctggttgaactt |
138 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
36296486 |
acctgatgttaagtctattgagatctctggttgaactt |
36296449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 35107047 - 35107183
Alignment:
| Q |
1 |
ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa |
100 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||| || || |||||||||||||| |
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|
| T |
35107047 |
ggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgctatggagaatggtgttctcgctgtcactgtccctaaggaagagatcaagaa |
35107146 |
T |
|
| Q |
101 |
gcctgatgttaagtccattgaaatctctggttgaact |
137 |
Q |
| |
|
|||||| || || |||||||||||||||||| |||| |
|
|
| T |
35107147 |
gcctgaagtcaaagccattgaaatctctggttaaact |
35107183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 36935975 - 36935859
Alignment:
| Q |
17 |
tgagaatgcgaaaatggaccaagtgaaagctgcaat-ggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtc |
115 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||| | ||||||||||| || ||| | |
|
|
| T |
36935975 |
tgagaatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgttaccgtgccacaagaagaggttaagaagcctgaagtgaagac |
36935876 |
T |
|
| Q |
116 |
cattgaaatctctggtt |
132 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
36935875 |
cattgatatctctggtt |
36935859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 36940600 - 36940478
Alignment:
| Q |
9 |
agattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatg |
108 |
Q |
| |
|
||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||||||||| ||||| || ||| ||||||||||||| | ||| | |
|
|
| T |
36940600 |
agattgcctgagaatgctaaaatggatcaaatgaaagctgcaatggagaatggcattctcactgtcactgtgcctaaaaaagagatcaagaatcatgaag |
36940501 |
T |
|
| Q |
109 |
ttaagtccattgaaatctctggt |
131 |
Q |
| |
|
|||| ||||||| ||||||||| |
|
|
| T |
36940500 |
ttaaaaccattgatatctctggt |
36940478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 36953766 - 36953720
Alignment:
| Q |
9 |
agattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatgga |
55 |
Q |
| |
|
||||||||||| ||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
36953766 |
agattgcctgacaatgctaaaacggatcaagtgaaagctgcaatgga |
36953720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 24014312 - 24014177
Alignment:
| Q |
1 |
ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa |
100 |
Q |
| |
|
|||| ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
24014312 |
ggagattcaggttgcccgaaaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaa |
24014213 |
T |
|
| Q |
101 |
gcctgatgttaagtccattgaaatctctggttgaac |
136 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24014212 |
acctgatgttaagtccatcgaaatctctggttgaac |
24014177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 24040869 - 24040733
Alignment:
| Q |
1 |
ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa |
100 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| || || ||||| | ||||| |
|
|
| T |
24040869 |
ggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtattctcactgtcactgtccctaaggaagaagttaagaa |
24040770 |
T |
|
| Q |
101 |
gcctgatgttaagtccattgaaatctctggttgaact |
137 |
Q |
| |
|
|||| | || ||| ||||||| |||||||||| |||| |
|
|
| T |
24040769 |
gcctcaagtgaagaccattgatatctctggttaaact |
24040733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 34919145 - 34919274
Alignment:
| Q |
1 |
ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa |
100 |
Q |
| |
|
||||||| || ||||||||||||| |||||||| || || ||||||| ||||||||||| ||||| |||||||||||||| || ||||| ||||| |
|
|
| T |
34919145 |
ggaggtttaggttgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaagaagagaagaa |
34919244 |
T |
|
| Q |
101 |
gcctgatgttaagtccattgaaatctctgg |
130 |
Q |
| |
|
| ||| |||||||| |||||||| ||||| |
|
|
| T |
34919245 |
gagtgaggttaagtctattgaaatttctgg |
34919274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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