View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19988_low_10 (Length: 325)

Name: NF19988_low_10
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19988_low_10
NF19988_low_10
[»] chr4 (59 HSPs)
chr4 (168-306)||(38996771-38996909)
chr4 (1-107)||(16555765-16555871)
chr4 (1-107)||(3930428-3930533)
chr4 (54-107)||(56505693-56505746)
chr4 (54-107)||(4239367-4239420)
chr4 (54-107)||(50678779-50678832)
chr4 (57-107)||(292782-292832)
chr4 (1-104)||(13198606-13198710)
chr4 (54-104)||(36096476-36096526)
chr4 (57-107)||(39415528-39415578)
chr4 (54-107)||(293218-293271)
chr4 (54-106)||(8181992-8182045)
chr4 (54-107)||(13198907-13198960)
chr4 (54-107)||(24775784-24775837)
chr4 (54-107)||(28196346-28196399)
chr4 (54-107)||(28196774-28196827)
chr4 (54-107)||(32703651-32703704)
chr4 (54-107)||(36095817-36095870)
chr4 (54-103)||(49178817-49178866)
chr4 (54-107)||(50679425-50679478)
chr4 (54-107)||(54508815-54508868)
chr4 (55-107)||(22681881-22681933)
chr4 (54-106)||(25161879-25161931)
chr4 (59-107)||(56506580-56506628)
chr4 (56-107)||(9380744-9380795)
chr4 (54-107)||(169013-169067)
chr4 (54-107)||(9023244-9023297)
chr4 (54-107)||(9023681-9023734)
chr4 (58-107)||(9380307-9380356)
chr4 (54-107)||(11241662-11241714)
chr4 (54-107)||(16555515-16555568)
chr4 (54-107)||(18077203-18077256)
chr4 (54-107)||(25225399-25225452)
chr4 (54-107)||(26207747-26207800)
chr4 (54-102)||(27304894-27304943)
chr4 (54-107)||(32703225-32703278)
chr4 (54-107)||(39744030-39744083)
chr4 (54-107)||(39744466-39744519)
chr4 (54-107)||(43051253-43051306)
chr4 (54-107)||(48405962-48406014)
chr4 (54-102)||(49178644-49178693)
chr4 (54-106)||(11529169-11529221)
chr4 (54-106)||(22681576-22681627)
chr4 (54-106)||(43292038-43292090)
chr4 (56-107)||(7603422-7603472)
chr4 (1-36)||(11241638-11241673)
chr4 (54-107)||(23432476-23432530)
chr4 (54-107)||(23539841-23539892)
chr4 (54-104)||(43050610-43050660)
chr4 (54-107)||(169440-169493)
chr4 (1-38)||(5206207-5206244)
chr4 (54-106)||(7603146-7603196)
chr4 (54-102)||(8488312-8488361)
chr4 (54-107)||(23540253-23540306)
chr4 (54-107)||(26207361-26207413)
chr4 (54-107)||(35393777-35393829)
chr4 (54-107)||(45830197-45830250)
chr4 (55-107)||(39086625-39086677)
chr4 (54-94)||(54509116-54509156)
[»] scaffold0802 (2 HSPs)
scaffold0802 (1-107)||(1368-1474)
scaffold0802 (54-107)||(1118-1171)
[»] chr8 (52 HSPs)
chr8 (1-107)||(41662351-41662457)
chr8 (1-107)||(43245871-43245977)
chr8 (1-105)||(765736-765840)
chr8 (1-107)||(12281124-12281230)
chr8 (1-107)||(15156133-15156239)
chr8 (54-107)||(9823362-9823415)
chr8 (54-107)||(39724049-39724102)
chr8 (55-107)||(13026635-13026687)
chr8 (1-107)||(16928942-16929046)
chr8 (54-104)||(13027282-13027332)
chr8 (4-107)||(3463896-3463999)
chr8 (54-107)||(13936723-13936775)
chr8 (54-107)||(15155883-15155936)
chr8 (54-107)||(16929243-16929296)
chr8 (54-107)||(22851390-22851443)
chr8 (54-107)||(24473343-24473396)
chr8 (54-107)||(37752084-37752137)
chr8 (1-42)||(37752179-37752220)
chr8 (54-107)||(37752417-37752470)
chr8 (54-107)||(43246177-43246230)
chr8 (54-105)||(25438794-25438845)
chr8 (1-39)||(74933-74971)
chr8 (54-104)||(15444648-15444698)
chr8 (54-104)||(34498125-34498175)
chr8 (54-107)||(9623502-9623555)
chr8 (54-107)||(9822748-9822801)
chr8 (54-107)||(12281427-12281480)
chr8 (54-107)||(13937390-13937443)
chr8 (54-107)||(20861639-20861692)
chr8 (55-104)||(22786843-22786892)
chr8 (54-107)||(23123338-23123391)
chr8 (54-107)||(34498556-34498609)
chr8 (54-107)||(37396708-37396761)
chr8 (58-107)||(37397150-37397199)
chr8 (54-107)||(41662107-41662160)
chr8 (55-107)||(41662521-41662573)
chr8 (54-93)||(3463654-3463693)
chr8 (57-107)||(6092777-6092825)
chr8 (60-107)||(9465607-9465653)
chr8 (58-105)||(33726696-33726743)
chr8 (57-107)||(3307338-3307388)
chr8 (54-104)||(15042148-15042198)
chr8 (54-107)||(34313765-34313816)
chr8 (54-102)||(18019915-18019964)
chr8 (54-107)||(24473769-24473822)
chr8 (1-42)||(34314012-34314053)
chr8 (54-103)||(43162540-43162588)
chr8 (57-93)||(7127666-7127702)
chr8 (55-107)||(16169174-16169225)
chr8 (55-87)||(22851958-22851990)
chr8 (54-105)||(23123518-23123567)
chr8 (55-107)||(43162234-43162285)
[»] chr2 (45 HSPs)
chr2 (1-107)||(30190923-30191029)
chr2 (1-104)||(40469677-40469780)
chr2 (1-107)||(20347412-20347518)
chr2 (6-107)||(24832331-24832432)
chr2 (1-107)||(6171405-6171510)
chr2 (1-104)||(32673091-32673193)
chr2 (1-107)||(11883623-11883729)
chr2 (1-107)||(26737729-26737835)
chr2 (54-107)||(2639483-2639536)
chr2 (54-107)||(11883927-11883980)
chr2 (54-107)||(18296694-18296747)
chr2 (54-107)||(26841587-26841640)
chr2 (54-107)||(2638820-2638873)
chr2 (54-107)||(5378661-5378714)
chr2 (54-107)||(17850978-17851031)
chr2 (54-107)||(26842239-26842292)
chr2 (54-107)||(37720204-37720257)
chr2 (58-107)||(41790917-41790966)
chr2 (54-106)||(18296077-18296129)
chr2 (5-105)||(15321394-15321492)
chr2 (54-105)||(19141446-19141496)
chr2 (54-104)||(7591204-7591254)
chr2 (54-104)||(8851151-8851201)
chr2 (54-104)||(18055317-18055367)
chr2 (54-107)||(5379960-5380013)
chr2 (54-107)||(8851583-8851636)
chr2 (54-107)||(30191226-30191279)
chr2 (55-107)||(6171156-6171207)
chr2 (55-107)||(6495723-6495775)
chr2 (54-104)||(17345736-17345784)
chr2 (55-105)||(6325349-6325399)
chr2 (54-104)||(15321515-15321565)
chr2 (54-104)||(26692399-26692449)
chr2 (54-104)||(26692821-26692871)
chr2 (54-107)||(26737482-26737533)
chr2 (54-107)||(7664248-7664301)
chr2 (54-107)||(7664674-7664727)
chr2 (54-107)||(16910827-16910880)
chr2 (54-107)||(20347163-20347216)
chr2 (54-102)||(26737657-26737706)
chr2 (54-107)||(40469427-40469480)
chr2 (55-107)||(17346037-17346088)
chr2 (55-107)||(29230282-29230334)
chr2 (55-107)||(40221313-40221364)
chr2 (64-104)||(40221584-40221624)
[»] chr1 (60 HSPs)
chr1 (1-107)||(47955306-47955412)
chr1 (1-107)||(41082909-41083014)
chr1 (54-107)||(4692434-4692487)
chr1 (54-107)||(8108994-8109047)
chr1 (54-104)||(1176839-1176889)
chr1 (54-107)||(46824279-46824332)
chr1 (54-107)||(48190771-48190824)
chr1 (54-107)||(49284409-49284462)
chr1 (54-105)||(17518603-17518653)
chr1 (54-105)||(50526473-50526524)
chr1 (54-107)||(6703895-6703948)
chr1 (54-107)||(9347126-9347179)
chr1 (54-107)||(13589660-13589712)
chr1 (54-107)||(13918446-13918499)
chr1 (55-104)||(22149701-22149750)
chr1 (54-107)||(32163044-32163097)
chr1 (54-107)||(39690794-39690847)
chr1 (54-107)||(39692001-39692054)
chr1 (54-107)||(44911025-44911078)
chr1 (54-107)||(48191356-48191409)
chr1 (54-107)||(48313793-48313846)
chr1 (54-104)||(1177019-1177069)
chr1 (4-104)||(31847898-31847997)
chr1 (54-104)||(44911438-44911488)
chr1 (57-107)||(49317752-49317801)
chr1 (54-104)||(50430082-50430132)
chr1 (54-107)||(6002237-6002290)
chr1 (54-107)||(9347552-9347604)
chr1 (54-107)||(20371354-20371406)
chr1 (54-107)||(20480613-20480665)
chr1 (54-107)||(21687025-21687078)
chr1 (54-107)||(27172116-27172168)
chr1 (54-107)||(47955609-47955662)
chr1 (54-107)||(48105117-48105170)
chr1 (55-107)||(6703460-6703512)
chr1 (54-102)||(32162734-32162782)
chr1 (56-104)||(46823846-46823894)
chr1 (55-106)||(13918869-13918920)
chr1 (57-107)||(47498301-47498349)
chr1 (54-104)||(8108724-8108774)
chr1 (54-107)||(20371040-20371091)
chr1 (57-107)||(27172545-27172595)
chr1 (54-104)||(28634158-28634208)
chr1 (54-104)||(48104681-48104731)
chr1 (1-38)||(8108970-8109007)
chr1 (54-107)||(19008751-19008804)
chr1 (54-107)||(20480168-20480220)
chr1 (54-107)||(26814694-26814747)
chr1 (54-107)||(26815120-26815173)
chr1 (54-107)||(28633720-28633773)
chr1 (54-107)||(31848193-31848246)
chr1 (54-107)||(41083212-41083264)
chr1 (55-104)||(42611188-42611237)
chr1 (59-104)||(46057199-46057243)
chr1 (58-107)||(50615240-50615289)
chr1 (54-107)||(50615622-50615674)
chr1 (58-107)||(50623068-50623117)
chr1 (54-107)||(50623450-50623502)
chr1 (57-104)||(31848019-31848067)
chr1 (55-106)||(46056904-46056953)
[»] scaffold0110 (2 HSPs)
scaffold0110 (1-107)||(45755-45860)
scaffold0110 (56-107)||(45537-45587)
[»] chr7 (56 HSPs)
chr7 (1-107)||(3687605-3687710)
chr7 (1-107)||(9412273-9412379)
chr7 (54-107)||(44599489-44599542)
chr7 (54-107)||(44600136-44600189)
chr7 (59-107)||(23686723-23686771)
chr7 (54-107)||(9035294-9035347)
chr7 (54-107)||(10533034-10533087)
chr7 (54-107)||(13772902-13772955)
chr7 (54-107)||(13863313-13863366)
chr7 (54-107)||(23686421-23686473)
chr7 (54-107)||(37888833-37888886)
chr7 (54-107)||(37889260-37889313)
chr7 (54-107)||(37972397-37972450)
chr7 (54-107)||(46816312-46816365)
chr7 (54-106)||(8953890-8953941)
chr7 (55-107)||(18925062-18925114)
chr7 (61-107)||(13863964-13864010)
chr7 (54-104)||(20418891-20418941)
chr7 (57-107)||(29292922-29292972)
chr7 (54-107)||(3205094-3205147)
chr7 (54-107)||(8643767-8643820)
chr7 (54-107)||(9034867-9034920)
chr7 (54-107)||(9412023-9412076)
chr7 (54-107)||(13772641-13772694)
chr7 (54-107)||(16198978-16199031)
chr7 (54-107)||(17156967-17157020)
chr7 (54-107)||(20419325-20419378)
chr7 (54-107)||(22740156-22740209)
chr7 (54-107)||(30857905-30857958)
chr7 (54-107)||(33628661-33628714)
chr7 (54-100)||(5735382-5735429)
chr7 (54-105)||(29291808-29291859)
chr7 (56-107)||(29293349-29293400)
chr7 (54-107)||(3204669-3204720)
chr7 (54-107)||(3687353-3687407)
chr7 (56-106)||(5735253-5735303)
chr7 (54-104)||(18863970-18864020)
chr7 (54-103)||(18925230-18925280)
chr7 (1-38)||(5349710-5349747)
chr7 (59-104)||(5735553-5735598)
chr7 (54-107)||(6908213-6908265)
chr7 (54-107)||(13741557-13741610)
chr7 (54-107)||(13744234-13744286)
chr7 (54-107)||(29292042-29292095)
chr7 (54-107)||(35079960-35080012)
chr7 (1-38)||(35080200-35080237)
chr7 (54-107)||(37971960-37972013)
chr7 (55-103)||(38191387-38191435)
chr7 (54-107)||(38191566-38191619)
chr7 (54-107)||(48359320-48359372)
chr7 (55-107)||(18864404-18864455)
chr7 (57-104)||(27096168-27096216)
chr7 (57-104)||(27182087-27182135)
chr7 (57-105)||(33628397-33628444)
chr7 (67-107)||(34235738-34235778)
chr7 (55-107)||(38826915-38826967)
[»] chr6 (24 HSPs)
chr6 (1-107)||(3403937-3404043)
chr6 (1-107)||(18242104-18242210)
chr6 (4-107)||(21031979-21032081)
chr6 (1-104)||(30388312-30388413)
chr6 (54-107)||(3403717-3403770)
chr6 (54-107)||(33828990-33829043)
chr6 (54-107)||(33829637-33829690)
chr6 (54-107)||(10039676-10039728)
chr6 (54-107)||(18241854-18241907)
chr6 (7-107)||(31598227-31598326)
chr6 (54-107)||(7654549-7654602)
chr6 (54-107)||(10087859-10087912)
chr6 (54-107)||(11656783-11656836)
chr6 (58-107)||(21032285-21032334)
chr6 (54-107)||(33655116-33655168)
chr6 (54-107)||(33974300-33974353)
chr6 (54-104)||(33658566-33658617)
chr6 (54-104)||(3825530-3825579)
chr6 (57-107)||(30388062-30388111)
chr6 (54-102)||(2762611-2762660)
chr6 (54-102)||(10039844-10039893)
chr6 (57-102)||(12714436-12714481)
chr6 (54-107)||(13579652-13579704)
chr6 (54-107)||(23250592-23250644)
[»] chr5 (44 HSPs)
chr5 (1-107)||(18433015-18433121)
chr5 (1-107)||(25115757-25115863)
chr5 (1-107)||(25174849-25174955)
chr5 (1-107)||(26020450-26020556)
chr5 (54-107)||(18817612-18817665)
chr5 (55-101)||(16726084-16726130)
chr5 (54-107)||(5187831-5187884)
chr5 (54-107)||(12498567-12498620)
chr5 (54-107)||(12498929-12498982)
chr5 (54-107)||(18433317-18433370)
chr5 (54-107)||(18816952-18817005)
chr5 (54-107)||(22429197-22429249)
chr5 (54-107)||(25116062-25116115)
chr5 (54-107)||(25175152-25175205)
chr5 (54-107)||(26571165-26571218)
chr5 (54-107)||(33324839-33324892)
chr5 (1-42)||(34576930-34576971)
chr5 (55-107)||(34147512-34147564)
chr5 (54-104)||(9665560-9665608)
chr5 (54-104)||(11351428-11351478)
chr5 (57-107)||(16466746-16466796)
chr5 (54-104)||(21207229-21207279)
chr5 (54-107)||(11350808-11350860)
chr5 (54-107)||(19514964-19515017)
chr5 (54-107)||(22428934-22428986)
chr5 (1-38)||(22429173-22429210)
chr5 (54-107)||(23011079-23011131)
chr5 (55-104)||(31569910-31569958)
chr5 (54-107)||(34577165-34577217)
chr5 (54-106)||(22729441-22729492)
chr5 (54-104)||(22629525-22629576)
chr5 (57-107)||(10098519-10098569)
chr5 (54-107)||(3888239-3888292)
chr5 (1-38)||(5187591-5187628)
chr5 (54-107)||(9665828-9665879)
chr5 (54-107)||(25940521-25940574)
chr5 (54-107)||(26570729-26570782)
chr5 (54-107)||(37610202-37610254)
chr5 (54-107)||(37780320-37780372)
chr5 (54-107)||(41383168-41383220)
chr5 (55-107)||(12441042-12441093)
chr5 (6-42)||(12441265-12441301)
chr5 (57-104)||(23011261-23011309)
chr5 (55-107)||(43464194-43464245)
[»] chr3 (45 HSPs)
chr3 (1-107)||(20968968-20969073)
chr3 (1-107)||(10293608-10293714)
chr3 (54-107)||(18874882-18874935)
chr3 (54-107)||(47666336-47666389)
chr3 (54-107)||(1927772-1927825)
chr3 (54-107)||(10293910-10293963)
chr3 (54-107)||(17372298-17372351)
chr3 (54-107)||(18875192-18875245)
chr3 (54-107)||(47871123-47871175)
chr3 (54-107)||(48159897-48159950)
chr3 (54-107)||(53766580-53766633)
chr3 (54-104)||(3644538-3644588)
chr3 (1-39)||(18874957-18874995)
chr3 (54-107)||(21895657-21895711)
chr3 (54-107)||(8314013-8314066)
chr3 (1-104)||(9026739-9026838)
chr3 (54-107)||(9027034-9027086)
chr3 (54-107)||(10348800-10348853)
chr3 (54-107)||(20968718-20968771)
chr3 (54-107)||(40848962-40849015)
chr3 (54-107)||(42672978-42673030)
chr3 (54-107)||(45060872-45060925)
chr3 (54-107)||(48160334-48160387)
chr3 (54-107)||(53687888-53687941)
chr3 (54-106)||(22429159-22429211)
chr3 (56-104)||(26007622-26007670)
chr3 (55-107)||(47665911-47665963)
chr3 (54-104)||(13657622-13657673)
chr3 (54-104)||(1928435-1928484)
chr3 (54-104)||(23630036-23630086)
chr3 (54-104)||(26540694-26540743)
chr3 (54-104)||(27238901-27238951)
chr3 (54-107)||(47870823-47870876)
chr3 (54-104)||(53766166-53766216)
chr3 (54-107)||(3353128-3353180)
chr3 (54-107)||(8315083-8315135)
chr3 (54-107)||(21896512-21896564)
chr3 (54-107)||(24485461-24485513)
chr3 (54-107)||(27238465-27238518)
chr3 (54-107)||(40848521-40848573)
chr3 (58-107)||(42455790-42455839)
chr3 (54-107)||(42673297-42673349)
chr3 (55-102)||(18875017-18875065)
chr3 (55-107)||(44008403-44008454)
chr3 (59-107)||(45060596-45060644)
[»] scaffold0319 (2 HSPs)
scaffold0319 (1-107)||(6645-6750)
scaffold0319 (54-107)||(6394-6447)
[»] scaffold0192 (1 HSPs)
scaffold0192 (1-107)||(25317-25423)
[»] scaffold0041 (1 HSPs)
scaffold0041 (54-107)||(38696-38749)
[»] scaffold0001 (5 HSPs)
scaffold0001 (54-107)||(438930-438983)
scaffold0001 (57-107)||(439203-439253)
scaffold0001 (54-104)||(183367-183416)
scaffold0001 (61-107)||(183670-183716)
scaffold0001 (57-104)||(183544-183592)
[»] scaffold0015 (2 HSPs)
scaffold0015 (55-107)||(17158-17209)
scaffold0015 (1-42)||(16918-16959)
[»] scaffold0535 (1 HSPs)
scaffold0535 (57-107)||(10012-10062)
[»] scaffold0328 (2 HSPs)
scaffold0328 (54-107)||(6796-6849)
scaffold0328 (1-107)||(6152-6257)
[»] scaffold0029 (1 HSPs)
scaffold0029 (54-107)||(9905-9958)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-107)||(411923-412027)
[»] scaffold1221 (1 HSPs)
scaffold1221 (54-107)||(1511-1563)
[»] scaffold0460 (2 HSPs)
scaffold0460 (54-107)||(764-816)
scaffold0460 (57-107)||(330-380)
[»] scaffold0376 (2 HSPs)
scaffold0376 (54-107)||(7455-7507)
scaffold0376 (54-107)||(7601-7653)
[»] scaffold0069 (2 HSPs)
scaffold0069 (54-107)||(50508-50560)
scaffold0069 (54-107)||(50075-50126)
[»] scaffold0017 (1 HSPs)
scaffold0017 (54-107)||(185275-185328)
[»] scaffold0009 (1 HSPs)
scaffold0009 (54-107)||(205687-205739)
[»] scaffold0598 (1 HSPs)
scaffold0598 (54-106)||(6877-6927)
[»] scaffold0035 (1 HSPs)
scaffold0035 (55-106)||(72967-73018)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 59)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 168 - 306
Target Start/End: Original strand, 38996771 - 38996909
Alignment:
Q  168 aattcatccaatccaaactgcattttttaagctcgtagaaacaaaactttttccatgaaaagttgtaatgcttgtgtgtatttagggtaatgaagaggaa 267  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38996771 aattcatccaatccaaactgcattttttaagctcgtggaaacaaaactttttccatgaaaagttgtaacgcttgtgtgtatttagggtaatgaagaggaa 38996870  T
Q  268 gagaggagatgaattattttaaatttacttttatacttt 306  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  38996871 gagagaagatgaattattttaaatttagttttatacttt 38996909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 16555765 - 16555871
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||| |||||||||| |||| ||||||||||    
T  16555765 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagatggggtgcaaaatcgcacaattagcaaaagataagggggaaaagtgcaa 16555864  T
Q  101 ttaagcc 107  Q
    |||||||    
T  16555865 ttaagcc 16555871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 3930428 - 3930533
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||| ||           ||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  3930428 aatcagaaagggggcaaaaagatggggtgcaaaatcgctaaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggggg-aaaagtgcaa 3930526  T
Q  101 ttaagcc 107  Q
    |||||||    
T  3930527 ttaagcc 3930533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 56505746 - 56505693
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  56505746 gggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagcc 56505693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 4239367 - 4239420
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  4239367 gggtgcaaaatcgcacaattggcaaactatagggggaaaaagtgcaattaagcc 4239420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 50678832 - 50678779
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  50678832 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 50678779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 292832 - 292782
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||||||||||||||  |||||||| |||||||||||||||||    
T  292832 tgcaaaattgcacaattggcaaactataggggggaaaagtgcaattaagcc 292782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 13198710 - 13198606
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctc-aacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgca 99  Q
    ||||||||||||||||||||||||||||| |||||||||| ||           ||||||||||| |||||||||||||||||||  ||  |||||||||    
T  13198710 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataaaggagaaaagtgca 13198611  T
Q  100 attaa 104  Q
    |||||    
T  13198610 attaa 13198606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 36096476 - 36096526
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  36096476 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaa 36096526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 39415528 - 39415578
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  39415528 tgcaaaattgcacaattagcaaaagatagagggaaaaagtgcagttaagcc 39415578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 293218 - 293271
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  ||||||||||||||||||||||||||    
T  293218 gggtgcaaaatcgcacaattgacaaactatagggggaaaaagtgcaattaagcc 293271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 8182045 - 8181992
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaa-gatagggggaaaaagtgcaattaagc 106  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  8182045 gggtgcaaaatcgcacaattggcaaaacgatagggggcaaaagtgcaattaagc 8181992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 13198907 - 13198960
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  13198907 gggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcc 13198960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 24775784 - 24775837
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||||||||| || |||||||||||||||||    
T  24775784 gggtgcaaaatcgcacaattgacaaaagataggagggaaaagtgcaattaagcc 24775837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 28196399 - 28196346
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  28196399 gggtgcaaaatcgcacaattggcaaattataggggggaaaagtgcaattaagcc 28196346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 28196774 - 28196827
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  28196774 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 28196827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 32703651 - 32703704
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  32703651 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 32703704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 36095870 - 36095817
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||| ||||||||||||    
T  36095870 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaaatgcaattaagcc 36095817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 49178817 - 49178866
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaatta 103  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  49178817 gggtgcaaaatcgcacaattggcaaaagataggggagaaaagtgcaatta 49178866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 50679425 - 50679478
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| | |||||||||||||||||||||  |||||||||||||||||    
T  50679425 gggtgcaaaatcgtacaattggcaaaagataggggtgaaaagtgcaattaagcc 50679478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 54508868 - 54508815
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  ||||||||||||||||| || ||||||||||||||||||||    
T  54508868 gggtgcaaaatcacacaattggcaaaagattggaggaaaaagtgcaattaagcc 54508815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 22681881 - 22681933
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||||||||||  ||||||||||| || |||||||||||||||||    
T  22681881 ggtgcaaaattgcacaattaacaaaagataggagggaaaagtgcaattaagcc 22681933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 25161931 - 25161879
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    ||||||||||| ||||||||||||||  |||||||| ||||||||||||||||    
T  25161931 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 25161879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 56506580 - 56506628
Alignment:
Q  59 caaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||||||||||||||||| |||  |||||||||||||||||    
T  56506580 caaaattgcacaattggcaaaagataagggtgaaaagtgcaattaagcc 56506628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 9380744 - 9380795
Alignment:
Q  56 gtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  9380744 gtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 9380795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 169067 - 169013
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagataggggga-aaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||||||||| |||||||||||||||||    
T  169067 gggtgcaaaatcgcacaattggcaaactatagggggagaaaagtgcaattaagcc 169013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 9023297 - 9023244
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||  |||||||||||||||||    
T  9023297 gggtgcaaaatcgcacaattggcaaactataggggagaaaagtgcaattaagcc 9023244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 9023681 - 9023734
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  9023681 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 9023734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 9380356 - 9380307
Alignment:
Q  58 gcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  9380356 gcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 9380307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 11241662 - 11241714
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  ||||||||||||||||||||||| |||||| ||||||||||    
T  11241662 gggtgcaaaatcccacaattggcaaaagataggggg-aaaagtacaattaagcc 11241714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 16555568 - 16555515
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  ||||||||| |||| |||||||||||||||||    
T  16555568 gggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagcc 16555515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 18077203 - 18077256
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| |||||| |||||||  |||||||||||||||||    
T  18077203 gggtgcaaaatcgcacaattagcaaaaaataggggtgaaaagtgcaattaagcc 18077256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 25225399 - 25225452
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||||||||| |  | |||||||||||||||    
T  25225399 gggtgcaaaatcgcacaattggcaaaagataggagacagaagtgcaattaagcc 25225452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 26207747 - 26207800
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||| ||||||||||||    
T  26207747 gggtgcaaaatcgcacaattggcaaactataggggggaaaaatgcaattaagcc 26207800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 27304894 - 27304943
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaa-gatagggggaaaaagtgcaatt 102  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  27304894 gggtgcaaaatcgcacaattagcaaaaagatagggggaaaaagtgcaatt 27304943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 32703278 - 32703225
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||| ||| ||||||||||||||  |||||||| |||||||||||||||||    
T  32703278 gggtgcataatcgcacaattggcaaattataggggggaaaagtgcaattaagcc 32703225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 39744083 - 39744030
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||| ||||| |||||||||| |||  ||||||||||||||||||||||||||    
T  39744083 gggtggaaaatcgcacaattggtaaactatagggggaaaaagtgcaattaagcc 39744030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 39744466 - 39744519
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  39744466 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 39744519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 43051253 - 43051306
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  ||||||||||||||||||||||  |||| ||||||||||||    
T  43051253 gggtgcaaaatcacacaattggcaaaagataggggtgaaaaatgcaattaagcc 43051306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 48406014 - 48405962
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||| ||||||||||  |||||||| |||||||||||||||||    
T  48406014 gggtgcaaaattgcataattggcaaactataggggg-aaaagtgcaattaagcc 48405962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 49178693 - 49178644
Alignment:
Q  54 gggtgcaaaattgcacaattggc-aaaagatagggggaaaaagtgcaatt 102  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  49178693 gggtgcaaaatcgcacaattggcaaaaagatagggggcaaaagtgcaatt 49178644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 11529221 - 11529169
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    |||||||||||  ||||||||||||||| ||||| | ||||||||||||||||    
T  11529221 gggtgcaaaatcacacaattggcaaaagttagggaggaaaagtgcaattaagc 11529169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 22681627 - 22681576
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    ||||||||||| ||||||||| ||||||||||||||  |||||||||||||||    
T  22681627 gggtgcaaaatcgcacaattgacaaaagataggggg-gaaagtgcaattaagc 22681576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 43292090 - 43292038
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    ||||||||||| ||||||||| ||||  ||||||| |||||||||||||||||    
T  43292090 gggtgcaaaatcgcacaattgacaaactataggggaaaaaagtgcaattaagc 43292038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 7603422 - 7603472
Alignment:
Q  56 gtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||| |||||||||  |||||||| ||||||||||||||||||||||    
T  7603422 gtgcaaaatcgcacaattgtaaaaagata-ggggaaaaagtgcaattaagcc 7603472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11241638 - 11241673
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatc 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  11241638 aatcagaaagggggcaaaaagatggggtgcaaaatc 11241673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 23432530 - 23432476
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaaga-tagggggaaaaagtgcaattaagcc 107  Q
    ||||||| ||||||||||||| ||||| | ||||||| |||||||||||||||||    
T  23432530 gggtgcagaattgcacaattgacaaaaaaatagggggcaaaagtgcaattaagcc 23432476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 23539892 - 23539841
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||||||||  ||||||||||||||||    
T  23539892 gggtgcaaaatcgcacaattggcaaactataggggg--aaagtgcaattaagcc 23539841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 43050660 - 43050610
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| |||||||||| |||||||||||   ||||||||||||||    
T  43050660 gggtgcaaaatcgcacaattggtaaaagatagggatgaaaagtgcaattaa 43050610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 169440 - 169493
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||| ||||||||||||    
T  169440 gggtgcaaaatcgcacaattgacaaactataggggggaaaaatgcaattaagcc 169493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5206207 - 5206244
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgc 38  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  5206207 aatcagaaagggggcaaaaagatagggtgcaaaatcgc 5206244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 7603196 - 7603146
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    ||||||||||||||||||||   ||||||||||||  ||||||||||||||||    
T  7603196 gggtgcaaaattgcacaattaaaaaaagatagggg--aaaagtgcaattaagc 7603146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 8488361 - 8488312
Alignment:
Q  54 gggtgcaaaattgcacaattggc-aaaagatagggggaaaaagtgcaatt 102  Q
    |||||||||||||||||||| || |||| |||||||| ||||||||||||    
T  8488361 gggtgcaaaattgcacaattagcaaaaacatagggggcaaaagtgcaatt 8488312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 23540253 - 23540306
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||  |||||||||||||||||    
T  23540253 gggtgcaaaatcgcacaattgacaaactataggggtgaaaagtgcaattaagcc 23540306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 26207413 - 26207361
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||||||||  ||||||||||||||||    
T  26207413 gggtgcaaaatcgcacaattggcaaactataggggg-gaaagtgcaattaagcc 26207361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 35393777 - 35393829
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||| | |||||||| ||||||||||||| | |||||||||||||||||    
T  35393777 gggtgcaaattcgcacaattagcaaaagatagggtg-aaaagtgcaattaagcc 35393829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 45830197 - 45830250
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||| ||||| ||||||||| |||||||||||||  |||||||| ||||||||    
T  45830197 gggtgtaaaatcgcacaattgacaaaagataggggtgaaaagtgcgattaagcc 45830250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 39086625 - 39086677
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| ||||||||||||||  ||| |||  |||||||||||||||||    
T  39086625 ggtgcaaaatcgcacaattggcaaactatatgggagaaaagtgcaattaagcc 39086677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 54509116 - 54509156
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaa 94  Q
    ||||||||||| |||||||| |||||| |||||||||||||    
T  54509116 gggtgcaaaatcgcacaattagcaaaaaatagggggaaaaa 54509156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 1368 - 1474
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||||||||||||||||||||||||||||||    
T  1368 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagatagggggaaaaagtgcaa 1467  T
Q  101 ttaagcc 107  Q
    |||||||    
T  1468 ttaagcc 1474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 1171 - 1118
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  1171 gggtgcaaaatcgcacaattaacaaaagatagggggaaaaagtgcaattaagcc 1118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 52)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 41662351 - 41662457
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  41662351 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaataaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaa 41662450  T
Q  101 ttaagcc 107  Q
    |||||||    
T  41662451 ttaagcc 41662457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 43245977 - 43245871
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| ||||||||  |||||||||||||||||||||||||    
T  43245977 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaataaaaaagagggggtgcaaaatcgcacaattatcaaaagatagggggaaaaagtgcaa 43245878  T
Q  101 ttaagcc 107  Q
    |||||||    
T  43245877 ttaagcc 43245871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 765840 - 765736
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    |||| |||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  765840 aatctgaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaa 765741  T
Q  101 ttaag 105  Q
    |||||    
T  765740 ttaag 765736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 12281230 - 12281124
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    |||| |||||||||||||||||||||||| ||||||||||||            |||||||||| |||||||||||||||||||||||| ||||||||||    
T  12281230 aatctgaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagaggaggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaa 12281131  T
Q  101 ttaagcc 107  Q
    |||||||    
T  12281130 ttaagcc 12281124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 15156133 - 15156239
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||| ||           ||||||||||| ||||||||| |||||||||||||| ||||||||||    
T  15156133 aatcagaaagggggcaaaaagatggggtgcaaaatcgctaaaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagataggggggaaaagtgcaa 15156232  T
Q  101 ttaagcc 107  Q
    |||||||    
T  15156233 ttaagcc 15156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 9823362 - 9823415
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  9823362 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 9823415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 39724049 - 39724102
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  39724049 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 39724102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 13026687 - 13026635
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  13026687 ggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 13026635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 16929046 - 16928942
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| |||| |||||||           ||||||||||| |||||||| |||||||||||||||  |||||||||    
T  16929046 aatcagaaagggggcaaaaagatggggtgcaaaa-cgctcaa-aaaaaagagggggtgcaaaatcgcacaattagcaaaagatagggggggaaagtgcaa 16928949  T
Q  101 ttaagcc 107  Q
    |||||||    
T  16928948 ttaagcc 16928942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 13027282 - 13027332
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  13027282 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaa 13027332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 3463896 - 3463999
Alignment:
Q  4 cagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaatta 103  Q
    |||||| |||| |||||||||||||| ||||||||||||           |||||||| || |||||||| |||||| |||||||| |||||||||||||    
T  3463896 cagaaacggggtaaaaagatggggtgcaaaatcgctcaaaacaaaggagagggtgcaagatcgcacaattagcaaaatataggggggaaaagtgcaatta 3463995  T
Q  104 agcc 107  Q
    ||||    
T  3463996 agcc 3463999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 13936775 - 13936723
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||    
T  13936775 gggtgcaaaatcgcacaattggtaaaagataggggg-aaaagtgcaattaagcc 13936723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 15155936 - 15155883
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  15155936 gggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcc 15155883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 16929243 - 16929296
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  16929243 gggtgcaaaatcgcacaattagcaaaagataggggagaaaagtgcaattaagcc 16929296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 22851443 - 22851390
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| |||||||||||||  |||||||||||||||||    
T  22851443 gggtgcaaaatcgcacaattgacaaaagataggggtgaaaagtgcaattaagcc 22851390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 24473396 - 24473343
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  |||||||||||||  ||||||||||||||||||||||||||    
T  24473396 gggtgcaaaatcacacaattggcaaactatagggggaaaaagtgcaattaagcc 24473343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 37752137 - 37752084
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| |||||| |||||||| |||||||||||||||||    
T  37752137 gggtgcaaaatcgcacaattagcaaaacataggggggaaaagtgcaattaagcc 37752084  T

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Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37752220 - 37752179
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaa 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  37752220 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaa 37752179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 37752417 - 37752470
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  37752417 gggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcc 37752470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 43246177 - 43246230
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  ||||||| ||||||||||||||| |||||||||||||||||    
T  43246177 gggtgcaaaatcacacaattagcaaaagataggggggaaaagtgcaattaagcc 43246230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 25438845 - 25438794
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaag 105  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||    
T  25438845 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaag 25438794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 74933 - 74971
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgct 39  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  74933 aatcagaaagggggcaaaaagatggggtgcaaaatcgct 74971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 15444648 - 15444698
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| |||||||||| |||  |||||||||||||||||||||||    
T  15444648 gggtgcaaaatcgcacaattggtaaattatagggggaaaaagtgcaattaa 15444698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 34498175 - 34498125
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||| ||||  |||||||||||||||||||||||    
T  34498175 gggtgcaaaatcgcacaattgacaaactatagggggaaaaagtgcaattaa 34498125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 9623555 - 9623502
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||| | |||||||||||||||||||    
T  9623555 gggtgcaaaatcgcacaattggcaaactatagtgagaaaaagtgcaattaagcc 9623502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 9822801 - 9822748
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||  ||||||||||||  |||||||||||||||||    
T  9822801 gggtgcaaaatcgcacaattgataaaagataggggtgaaaagtgcaattaagcc 9822748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 12281427 - 12281480
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  ||||||||| |||| |||||||||||||||||    
T  12281427 gggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagcc 12281480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 13937390 - 13937443
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||| | ||||||||| ||||| |||||||| |||||||||||||||||    
T  13937390 gggtgcaaattcgcacaattgacaaaaaataggggggaaaagtgcaattaagcc 13937443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 20861639 - 20861692
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||| |  ||||||||||||| ||||||||||||    
T  20861639 gggtgcaaaatcgcacaattggcagactatagggggaaaaaatgcaattaagcc 20861692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 22786892 - 22786843
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||  ||||||| | ||||||||||||||||||||||||||||    
T  22786892 ggtgcaaaatcacacaattagtaaaagatagggggaaaaagtgcaattaa 22786843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 23123391 - 23123338
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||| ||||| ||||||||| ||||||||||| || |||||||||||||||||    
T  23123391 gggtgtaaaatcgcacaattgacaaaagataggagggaaaagtgcaattaagcc 23123338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 34498556 - 34498609
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| |||||  |||||||| |||||||||||||||||    
T  34498556 gggtgcaaaatcgcacaatttgcaaactataggggggaaaagtgcaattaagcc 34498609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 37396761 - 37396708
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||| ||||||  |||||||| |||||||||||||||||    
T  37396761 gggtgcaaaatcgcacaatcggcaaactataggggggaaaagtgcaattaagcc 37396708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 37397150 - 37397199
Alignment:
Q  58 gcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  37397150 gcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 37397199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 41662160 - 41662107
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  ||||||||| |||||||| |||||||||||||    
T  41662160 gggtgcaaaatcgcacaattaacaaaagatatggggaaaatgtgcaattaagcc 41662107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 41662573 - 41662521
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| ||||||||||||||  ||| |||| |||||||||||||||||    
T  41662573 ggtgcaaaatcgcacaattggcaaactatatgggggaaaagtgcaattaagcc 41662521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 3463693 - 3463654
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaa 93  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  3463693 gggtgcaaaattgcacaattaacaaaagatagggggaaaa 3463654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 6092825 - 6092777
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||| ||||||||| ||||||||||||||||||  ||||||||||||    
T  6092825 tgcaaaatcgcacaattgacaaaagatagggggaaaa--tgcaattaagcc 6092777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 9465653 - 9465607
Alignment:
Q  60 aaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||||    
T  9465653 aaaattgcacaattgacaaaagataggagg-aaaagtgcaattaagcc 9465607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 33726743 - 33726696
Alignment:
Q  58 gcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaag 105  Q
    ||||||| |||||||||| |||  ||||||||||||||||||||||||    
T  33726743 gcaaaatcgcacaattggtaaactatagggggaaaaagtgcaattaag 33726696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 3307388 - 3307338
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||| ||||||||| |||||||||||||  |||| ||||||||||||    
T  3307388 tgcaaaatcgcacaattgacaaaagataggggtgaaaaatgcaattaagcc 3307338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 15042198 - 15042148
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    |||||||||||  |||||||||||||||||| ||||  |||||||||||||    
T  15042198 gggtgcaaaatcacacaattggcaaaagataaggggggaaagtgcaattaa 15042148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 34313816 - 34313765
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  |||||||||||||  |||||||||||||||||    
T  34313816 gggtgcaaaatcgcacaattaacaaaagatagggg--aaaagtgcaattaagcc 34313765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 18019964 - 18019915
Alignment:
Q  54 gggtgcaaaattgcacaatt-ggcaaaagatagggggaaaaagtgcaatt 102  Q
    ||||||||||| |||||||| || ||||||||||||| ||||||||||||    
T  18019964 gggtgcaaaatcgcacaattaggaaaaagatagggggcaaaagtgcaatt 18019915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 24473769 - 24473822
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||||||   |||||||||||||||||    
T  24473769 gggtgcaaaatcgcacaattggcaaactatagggatgaaaagtgcaattaagcc 24473822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34314012 - 34314053
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaa 42  Q
    ||||||||| ||||||||||||||||||| |||||| |||||    
T  34314012 aatcagaaaaggggcaaaaagatggggtgcaaaatcactcaa 34314053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 43162540 - 43162588
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaatta 103  Q
    ||||||||||| |||| |||| |||||||||||||| |||||||||||||    
T  43162540 gggtgcaaaatcgcacgattgacaaaagataggggg-aaaagtgcaatta 43162588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 7127702 - 7127666
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaa 93  Q
    |||||||| |||||||| |||||||||||||||||||    
T  7127702 tgcaaaatcgcacaattagcaaaagatagggggaaaa 7127666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 16169225 - 16169174
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||||||||||||||||  |||||  | |||||||||||||||||    
T  16169225 ggtgcaaaattgcacaattggcaaactataggatg-aaaagtgcaattaagcc 16169174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 22851958 - 22851990
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagataggg 87  Q
    |||||||||| ||||||||||||||||||||||    
T  22851958 ggtgcaaaatcgcacaattggcaaaagataggg 22851990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 23123518 - 23123567
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaag 105  Q
    ||||||||||| |||||||| |||||||||| ||||  ||||||||||||||    
T  23123518 gggtgcaaaatcgcacaattagcaaaagataagggg--aaagtgcaattaag 23123567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 43162285 - 43162234
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| ||||||||  ||||| |||||||| |||||||||||||||||    
T  43162285 ggtgcaaaatcgcacaattaacaaaatataggggg-aaaagtgcaattaagcc 43162234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 30191029 - 30190923
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  30191029 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaa 30190930  T
Q  101 ttaagcc 107  Q
    |||||||    
T  30190929 ttaagcc 30190923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 40469677 - 40469780
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  40469677 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagatagggggaaaaagtgcaa 40469776  T
Q  101 ttaa 104  Q
    ||||    
T  40469777 ttaa 40469780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 20347412 - 20347518
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||| ||||||||||||||| |||||| |||||           ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  20347412 aatcagaaaggggacaaaaagatggggtgcaaaatccctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaa 20347511  T
Q  101 ttaagcc 107  Q
    |||||||    
T  20347512 ttaagcc 20347518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 24832432 - 24832331
Alignment:
Q  6 gaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaag 105  Q
    |||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||| ||||||||||||||| |||||||||||||||    
T  24832432 gaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagatggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaag 24832333  T
Q  106 cc 107  Q
    ||    
T  24832332 cc 24832331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 6171405 - 6171510
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||| ||||||           |||||||||||  ||||||||||||||||||||||| ||||||||||    
T  6171405 aatcagaaagggggcaaaaagatggggtgcaaaattgctcaa-aaaaaaagaggggtgcaaaatcccacaattggcaaaagataggggggaaaagtgcaa 6171503  T
Q  101 ttaagcc 107  Q
    |||||||    
T  6171504 ttaagcc 6171510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 32673091 - 32673193
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    |||||||||| |||| ||||||||||||| ||||||||||||           ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  32673091 aatcagaaagagggcgaaaagatggggtgcaaaatcgctcaaaaaaaaatagggggtgcaaaatcgcacaattggcaaaagata-ggggaaaaagtgcaa 32673189  T
Q  101 ttaa 104  Q
    ||||    
T  32673190 ttaa 32673193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 11883729 - 11883623
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||| |||||||||||||||||| |||| ||||| ||||||           ||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  11883729 aatcataaagggggcaaaaagatgaggtgcaaaattgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaa 11883630  T
Q  101 ttaagcc 107  Q
    |||||||    
T  11883629 ttaagcc 11883623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 26737729 - 26737835
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||| |||||||||||||||| |||||           ||||||||||| ||||| || ||||||||||||||  ||||||||||    
T  26737729 aatcagaaagggggcaaaaggatggggtgtaaaatctctcaaaaaaaaaagaggggtgcaaaatcgcacagttagcaaaagataggggtgaaaagtgcaa 26737828  T
Q  101 ttaagcc 107  Q
    |||||||    
T  26737829 ttaagcc 26737835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 2639483 - 2639536
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  2639483 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 2639536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 11883927 - 11883980
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  11883927 gggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaagcc 11883980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 18296694 - 18296747
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  18296694 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 18296747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 26841640 - 26841587
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  26841640 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 26841587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 2638873 - 2638820
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||| ||||||||||||    
T  2638873 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaaatgcaattaagcc 2638820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 5378714 - 5378661
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  5378714 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 5378661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 17851031 - 17850978
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  17851031 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 17850978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 26842239 - 26842292
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||| |||||||    
T  26842239 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcacttaagcc 26842292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 37720257 - 37720204
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  37720257 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 37720204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 41790917 - 41790966
Alignment:
Q  58 gcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||||||||    
T  41790917 gcaaaatcgcacaattggcaaaatataggggggaaaagtgcaattaagcc 41790966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 18296129 - 18296077
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    ||||||||||| |||||||||||||||||||||||  |||||| |||||||||    
T  18296129 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtacaattaagc 18296077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 15321492 - 15321394
Alignment:
Q  5 agaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||| ||||||||||||||||||| ||||||||||||           || |||||||||||||||||  |||||||||||||  ||||||||||||||    
T  15321492 agaaatggggcaaaaagatggggtgcaaaatcgctcaaaataaaataggggatgcaaaattgcacaattaacaaaagatagggg--aaaagtgcaattaa 15321395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 19141496 - 19141446
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaag 105  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  19141496 gggtgcaaaat-gcacaattggcaaactatagggggaaaaagtgcaattaag 19141446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 7591254 - 7591204
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| |||||||||||||||||||||||  |||||| |||||||    
T  7591254 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtacaattaa 7591204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 8851201 - 8851151
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||||||||  |||||||| ||||||||||||||    
T  8851201 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 8851151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 18055317 - 18055367
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||| |||||| ||| ||||||||||||||||||    
T  18055317 gggtgcaaaatcgcacaattgacaaaaggtagagggaaaaagtgcaattaa 18055367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 5379960 - 5380013
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||| |||  |||||||| |||||||||||||||||    
T  5379960 gggtgcaaaatcgcacaattggtaaactataggggggaaaagtgcaattaagcc 5380013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 8851583 - 8851636
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  8851583 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 8851636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 30191226 - 30191279
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||   ||||||||||||| |||||||||||||||||    
T  30191226 gggtgcaaaatcgcacaattaataaaagataggggggaaaagtgcaattaagcc 30191279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 6171207 - 6171156
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  6171207 ggtgcaaaatcgcacaattaacaaaagataggggg-aaaagtgcaattaagcc 6171156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 6495723 - 6495775
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| ||||||||  |||||||||||| | |||||||||||||||||    
T  6495723 ggtgcaaaatcgcacaattcacaaaagatagggaggaaaagtgcaattaagcc 6495775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 17345784 - 17345736
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||||||| |||| ||||||||||||||  ||||||||||||||    
T  17345784 gggtgcaaaattgcataattagcaaaagatagggg--aaaagtgcaattaa 17345736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 6325349 - 6325399
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaag 105  Q
    |||||||||| ||||||||||||||  ||| |||| |||||||||||||||    
T  6325349 ggtgcaaaatcgcacaattggcaaactatatgggggaaaagtgcaattaag 6325399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 15321565 - 15321515
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||| |||| ||||||||||||  ||||||||||||||    
T  15321565 gggtgcaaaatcgcacagttggaaaaagataggggacaaaagtgcaattaa 15321515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 26692449 - 26692399
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||| ||||  |||| ||||||||||||||||||    
T  26692449 gggtgcaaaatcgcacaattgacaaactatagagggaaaaagtgcaattaa 26692399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 26692821 - 26692871
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||||||||  |||| ||| ||||||||||||||    
T  26692821 gggtgcaaaatcgcacaattggcaaactatagaggggaaaagtgcaattaa 26692871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 26737533 - 26737482
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| |||||||||||| |  |||||||||||||||||    
T  26737533 gggtgcaaaatcgcacaattagcaaaagataggag--aaaagtgcaattaagcc 26737482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 7664301 - 7664248
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||  |||  |||||||| |||||||||||||||||    
T  7664301 gggtgcaaaatcgcacaattgataaactataggggggaaaagtgcaattaagcc 7664248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 7664674 - 7664727
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||| | |||||||||||||||||    
T  7664674 gggtgcaaaatcgcacaattgacaaactatagggaggaaaagtgcaattaagcc 7664727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 16910880 - 16910827
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  | | |||| |||||||||||||||||    
T  16910880 gggtgcaaaatcgcacaattggcaaactacatgggggaaaagtgcaattaagcc 16910827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 20347216 - 20347163
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  |||||||||| ||| ||||||| |||||||||    
T  20347216 gggtgcaaaatcgcacaattaacaaaagatagaggggaaaagtgtaattaagcc 20347163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 26737657 - 26737706
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaa-gatagggggaaaaagtgcaatt 102  Q
    ||||||||||| |||||||| |||||| ||||||||| ||||||||||||    
T  26737657 gggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaatt 26737706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 40469480 - 40469427
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| |||||||||||| || |||| | ||||||||||    
T  40469480 gggtgcaaaatcgcacaattagcaaaagataggagggaaaaatacaattaagcc 40469427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 17346037 - 17346088
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| |||||||| ||||||||||  || ||||||||||||||||||    
T  17346037 ggtgcaaaatcgcacaattagcaaaagataaagg-aaaaagtgcaattaagcc 17346088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 29230334 - 29230282
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||  |||||||| |||||||||| | | |||||||||||||||||    
T  29230334 ggtgcaaaatcacacaattgacaaaagatagagaggaaaagtgcaattaagcc 29230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 40221364 - 40221313
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| | |||||| ||||||||||||||| ||| |||||||||||||    
T  40221364 ggtgcaaaatcgaacaattagcaaaagataggggg-aaaggtgcaattaagcc 40221313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 40221584 - 40221624
Alignment:
Q  64 ttgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    |||||||||| |||||||||| | |||||||||||||||||    
T  40221584 ttgcacaattagcaaaagatatgaggaaaaagtgcaattaa 40221624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 60)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 47955412 - 47955306
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  47955412 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaa 47955313  T
Q  101 ttaagcc 107  Q
    |||||||    
T  47955312 ttaagcc 47955306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 41083014 - 41082909
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||| ||           || |||||||| ||||||||||||||||||||||||||||||| |||    
T  41083014 aatcagaaagggggcaaaaagatggggtgcaaaatcgctaaa-aaaaaagaggggatgcaaaatcgcacaattggcaaaagatagggggaaaaagtacaa 41082916  T
Q  101 ttaagcc 107  Q
    |||||||    
T  41082915 ttaagcc 41082909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 4692434 - 4692487
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  4692434 gggtgcaaaattgcacaattggcaaactatagggggaaaaagtgcaattaagcc 4692487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 8108994 - 8109047
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  8108994 gggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagcc 8109047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 1176889 - 1176839
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  1176889 gggtgcaaaattgcacaattgacaaaagatagggggtaaaagtgcaattaa 1176839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 46824279 - 46824332
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  46824279 gggtgcaaaattgcacaattggcaaactataggaggaaaaagtgcaattaagcc 46824332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 48190824 - 48190771
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  48190824 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 48190771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 49284462 - 49284409
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  49284462 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 49284409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 17518603 - 17518653
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaag 105  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  17518603 gggtgcaaaatcgcacaattggcaaaagataggggg-aaaagtgcaattaag 17518653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 50526473 - 50526524
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaag 105  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  50526473 gggtgcaaaatcgcacaattggcaaactatagggggaaaaagtgcaattaag 50526524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 6703895 - 6703948
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||||||||||||  |||||||  |||||||||||||||||    
T  6703895 gggtgcaaaattgcacaattggcaaactataggggagaaaagtgcaattaagcc 6703948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 9347179 - 9347126
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  9347179 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 9347126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 13589660 - 13589712
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  13589660 gggtgcaaaatcgcacaattagcaaaagataggggg-aaaagtgcaattaagcc 13589712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 13918499 - 13918446
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||||| ||||||||||||||||||||    
T  13918499 gggtgcaaaatcgcacaattggcaaactataggaggaaaaagtgcaattaagcc 13918446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 22149701 - 22149750
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    |||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  22149701 ggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaa 22149750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 32163044 - 32163097
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  32163044 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 32163097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 39690847 - 39690794
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||    
T  39690847 gggtgcaaaatcgcacaattggccaaatatagggggaaaaagtgcaactaagcc 39690794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 39692001 - 39692054
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  39692001 gggtgcaaaatcgcacaattgacaaaatataggggggaaaagtgcaattaagcc 39692054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 44911078 - 44911025
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||| ||||||||  ||||||||||||||||    
T  44911078 gggtgcaaaatcgcacaattggcaaaatatagggggggaaagtgcaattaagcc 44911025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 48191356 - 48191409
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||| ||||||||||||||||||  |||||||||||||||||    
T  48191356 gggtgcaaaatcgcaccattggcaaaagataggggtgaaaagtgcaattaagcc 48191409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 48313793 - 48313846
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||||||||||| ||||||||||  |||||||||| ||||||||||    
T  48313793 gggtgcaaaattgcacaattagcaaaagataatgggaaaaagtacaattaagcc 48313846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 1177019 - 1177069
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    |||||||||||||||||||| || |||||||||| | ||||||||||||||    
T  1177019 gggtgcaaaattgcacaattagcgaaagatagggaggaaaagtgcaattaa 1177069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 31847997 - 31847898
Alignment:
Q  4 cagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaatta 103  Q
    |||||||||||||||||||| ||||| ||||||||||||           || ||||||||||||||||| |||||||||| ||||  ||||||||||||    
T  31847997 cagaaagggggcaaaaagatcgggtgcaaaatcgctcaa-aaaaaatatgggatgcaaaattgcacaattagcaaaagataagggggtaaagtgcaatta 31847899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 44911438 - 44911488
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||||||||  ||||||||||||| |||||||||    
T  44911438 gggtgcaaaatcgcacaattggcaaactatagggggaaaaaatgcaattaa 44911488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 49317801 - 49317752
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||||||||||||||  |||||||| |||||||||||||||||    
T  49317801 tgcaaaattgcacaattggcaaactataggggg-aaaagtgcaattaagcc 49317752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 50430082 - 50430132
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||||||||  |||||||| ||||||||||||||    
T  50430082 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 50430132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 6002290 - 6002237
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  |||||||| |||||||||||||  |||||||||||||||||    
T  6002290 gggtgcaaaatcacacaattgacaaaagataggggtgaaaagtgcaattaagcc 6002237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 9347552 - 9347604
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||||||||||||  ||||||||  ||||||||||||||||    
T  9347552 gggtgcaaaattgcacaattggcaaactataggggg-gaaagtgcaattaagcc 9347604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 20371354 - 20371406
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  20371354 gggtgcaaaatcgcacaattggcaaactataggggg-aaaagtgcaattaagcc 20371406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 20480613 - 20480665
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  20480613 gggtgcaaaatcgcacaattggcaaactataggggg-aaaagtgcaattaagcc 20480665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 21687078 - 21687025
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||| |||||||| ||||  |||||||| |||||||||||||||||    
T  21687078 gggtgcaaaattacacaattgacaaactataggggggaaaagtgcaattaagcc 21687025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 27172168 - 27172116
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  27172168 gggtgcaaaatcgcacaattggcaaactataggggg-aaaagtgcaattaagcc 27172116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 47955609 - 47955662
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||   ||||||||||||| |||||||||||||||||    
T  47955609 gggtgcaaaatcgcacaattaataaaagataggggggaaaagtgcaattaagcc 47955662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 48105117 - 48105170
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||| |||| |||||||||||||||||    
T  48105117 gggtgcaaaatcgcacaattggcaaactataagggggaaaagtgcaattaagcc 48105170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 6703512 - 6703460
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| |||||||||| |||  ||||| ||||||||||||||||||||    
T  6703512 ggtgcaaaatcgcacaattggtaaactataggaggaaaaagtgcaattaagcc 6703460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 32162782 - 32162734
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaatt 102  Q
    ||||||||||||||||||||||||||  |||||  ||||||||||||||    
T  32162782 gggtgcaaaattgcacaattggcaaactataggaagaaaaagtgcaatt 32162734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 46823894 - 46823846
Alignment:
Q  56 gtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||| ||||||||||||||  |||||||| ||||||||||||||    
T  46823894 gtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 46823846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 13918869 - 13918920
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    |||||||||| ||||||||||||||  |||||| | ||||||||||||||||    
T  13918869 ggtgcaaaatcgcacaattggcaaactatagggaggaaaagtgcaattaagc 13918920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 47498349 - 47498301
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||||||||||||||  ||||||||  ||||||||||||||||    
T  47498349 tgcaaaattgcacaattggcaaactataggggg--aaagtgcaattaagcc 47498301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 8108774 - 8108724
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||  |||||||||||| | ||||||||||||||    
T  8108774 gggtgcaaaatcgcacaattaacaaaagatagggaggaaaagtgcaattaa 8108724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 20371091 - 20371040
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||||||| ||||  ||||||||  ||||||||||||||||    
T  20371091 gggtgcaaaattgcacaattgacaaactataggggg--aaagtgcaattaagcc 20371040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 27172545 - 27172595
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||| ||||||||||||||  | |||||| |||||||||||||||||    
T  27172545 tgcaaaatcgcacaattggcaaagtacaggggggaaaagtgcaattaagcc 27172595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 28634158 - 28634208
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||| ||||  |||||||| ||||||||||||||    
T  28634158 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaa 28634208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 48104731 - 48104681
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||| ||||  |||||||| ||||||||||||||    
T  48104731 gggtgcaaaatcgcacaattgccaaactataggggggaaaagtgcaattaa 48104681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8108970 - 8109007
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgc 38  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  8108970 aatcaaaaagggggcaaaaagatggggtgcaaaatcgc 8109007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 19008751 - 19008804
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||  |||  |||||||| |||||||||||||||||    
T  19008751 gggtgcaaaatcgcacaattgcgaaactataggggggaaaagtgcaattaagcc 19008804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 20480220 - 20480168
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  20480220 gggtgcaaaatcgcacaattgacaaactataggggg-aaaagtgcaattaagcc 20480168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 26814747 - 26814694
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||| | |||||||||||||||||    
T  26814747 gggtgcaaaatcgcacaattgacaaactatagggaggaaaagtgcaattaagcc 26814694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 26815120 - 26815173
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||  |||  |||||||| |||||||||||||||||    
T  26815120 gggtgcaaaatcgcacaattgataaactataggggggaaaagtgcaattaagcc 26815173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 28633773 - 28633720
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| | ||||||||||||  ||| |||| |||||||||||||||||    
T  28633773 gggtgcaaaatcgtacaattggcaaactataagggggaaaagtgcaattaagcc 28633720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 31848193 - 31848246
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| | ||||||  |||||||||||||  |||||||||||||||||    
T  31848193 gggtgcaaaatcgtacaattaacaaaagataggggagaaaagtgcaattaagcc 31848246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 41083212 - 41083264
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||| |  |||||||||||||| |||||||||||||||||    
T  41083212 gggtgcaaaatcgcacaactaacaaaagataggggg-aaaagtgcaattaagcc 41083264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 42611237 - 42611188
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    |||||||||| ||||||||||||||  ||| |||| ||||||||||||||    
T  42611237 ggtgcaaaatcgcacaattggcaaactataagggggaaaagtgcaattaa 42611188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 46057199 - 46057243
Alignment:
Q  59 caaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    |||||||||| |||| |||||||||| |||||||||||||||||||    
T  46057199 caaaattgcataattagcaaaagata-ggggaaaaagtgcaattaa 46057243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 50615289 - 50615240
Alignment:
Q  58 gcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  50615289 gcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 50615240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 50615622 - 50615674
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  50615622 gggtgcaaaatcgcacaattgacaaactataggggg-aaaagtgcaattaagcc 50615674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 50623117 - 50623068
Alignment:
Q  58 gcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  50623117 gcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 50623068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 50623450 - 50623502
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  50623450 gggtgcaaaatcgcacaattgacaaactataggggg-aaaagtgcaattaagcc 50623502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 31848067 - 31848019
Alignment:
Q  57 tgcaaaattgcacaattggcaaaa-gatagggggaaaaagtgcaattaa 104  Q
    |||||||| ||||||||||||||| ||||| ||| ||||||||||||||    
T  31848067 tgcaaaatcgcacaattggcaaaaagatagagggcaaaagtgcaattaa 31848019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 46056953 - 46056904
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    |||||||||| ||| |||| |||||||||||||||  |||||||||||||||    
T  46056953 ggtgcaaaatcgcaaaattagcaaaagataggggg--aaagtgcaattaagc 46056904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 45755 - 45860
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  45755 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggg-aaaagtgcaa 45853  T
Q  101 ttaagcc 107  Q
    |||||||    
T  45854 ttaagcc 45860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 45587 - 45537
Alignment:
Q  56 gtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  45587 gtgcaaaatcgcacaattaacaaaagataggggg-aaaagtgcaattaagcc 45537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 56)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 3687605 - 3687710
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  3687605 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaa-aaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaa 3687703  T
Q  101 ttaagcc 107  Q
    |||||||    
T  3687704 ttaagcc 3687710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 9412273 - 9412379
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    |||| |||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  9412273 aatctgaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaa 9412372  T
Q  101 ttaagcc 107  Q
    |||||||    
T  9412373 ttaagcc 9412379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 44599542 - 44599489
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  44599542 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 44599489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 44600136 - 44600189
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  44600136 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 44600189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 23686723 - 23686771
Alignment:
Q  59 caaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  23686723 caaaatcgcacaattagcaaaagatagggggaaaaagtgcaattaagcc 23686771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 9035294 - 9035347
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  9035294 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 9035347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 10533087 - 10533034
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  10533087 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 10533034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 13772902 - 13772955
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||    
T  13772902 gggtgcaaaatcgcacaattagcaaatgataggggggaaaagtgcaattaagcc 13772955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 13863366 - 13863313
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||| ||||||||||||    
T  13863366 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaaatgcaattaagcc 13863313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 23686473 - 23686421
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||    
T  23686473 gggtgcaaaattgtacaattagcaaaagataggggg-aaaagtgcaattaagcc 23686421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 37888886 - 37888833
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  37888886 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 37888833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 37889260 - 37889313
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  37889260 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 37889313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 37972397 - 37972450
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  37972397 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 37972450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 46816312 - 46816365
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||    
T  46816312 gggtgcaaaatcgcataattggtaaaagatagcgggaaaaagtgcaattaagcc 46816365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 8953890 - 8953941
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  8953890 gggtgcaaaattgcacaattaacaaaagataggggg-aaaagtgcaattaagc 8953941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 18925114 - 18925062
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||||| |||||||||||||   |||||||||||||||||    
T  18925114 ggtgcaaaattgcacaattagcaaaagatagggaagaaaagtgcaattaagcc 18925062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 13863964 - 13864010
Alignment:
Q  61 aaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||    
T  13863964 aaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 13864010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 20418941 - 20418891
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||||||||  |||||||| ||||||||||||||    
T  20418941 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 20418891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 29292972 - 29292922
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  29292972 tgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 29292922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 3205094 - 3205147
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  3205094 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 3205147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 8643767 - 8643820
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||| |||||||||||   |||||||||||||||||    
T  8643767 gggtgcaaaatcgcacaattggtaaaagatagggatgaaaagtgcaattaagcc 8643820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 9034920 - 9034867
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||| ||| ||||||||||||||  |||||||| |||||||||||||||||    
T  9034920 gggtgcagaatcgcacaattggcaaattataggggggaaaagtgcaattaagcc 9034867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 9412076 - 9412023
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  ||||||||| |||| |||||||||||||||||    
T  9412076 gggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagcc 9412023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 13772694 - 13772641
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  ||||||| ||||||||||||| | |||||||||||||||||    
T  13772694 gggtgcaaaatcacacaattagcaaaagatagggaggaaaagtgcaattaagcc 13772641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 16198978 - 16199031
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||  |||||||||||||||||||||    
T  16198978 gggtgcaaaatcgcacaattggcaaactataatgggaaaaagtgcaattaagcc 16199031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 17157020 - 17156967
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  17157020 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 17156967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 20419325 - 20419378
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  20419325 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 20419378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 22740209 - 22740156
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  22740209 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 22740156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 30857905 - 30857958
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||||||| ||||||||| | |  |||||||||||||||||    
T  30857905 gggtgcaaaattgcacaattgacaaaagataagagacaaaagtgcaattaagcc 30857958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 33628661 - 33628714
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| | ||||||||| |||||||||||||||| ||||    
T  33628661 gggtgcaaaatcgcacaattagtaaaagatagagggaaaaagtgcaatttagcc 33628714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 5735429 - 5735382
Alignment:
Q  54 gggtgcaaaattgcacaattggc-aaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  5735429 gggtgcaaaatcgcacaattggcaaaaagatagggagaaaaagtgcaa 5735382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 29291859 - 29291808
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaag 105  Q
    ||||||||||| ||| ||||  |||||||||||| |||||||||||||||||    
T  29291859 gggtgcaaaatcgcataattatcaaaagatagggagaaaaagtgcaattaag 29291808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 29293349 - 29293400
Alignment:
Q  56 gtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||| ||||||||||||||  |||||||| |||| ||||||||||||    
T  29293349 gtgcaaaatcgcacaattggcaaactataggggggaaaaatgcaattaagcc 29293400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 3204720 - 3204669
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||||||||  ||||||||||||||||    
T  3204720 gggtgcaaaatcgcacaattggcaaactataggggg--aaagtgcaattaagcc 3204669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 3687407 - 3687353
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatag-ggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  |||||||||| |||| |||||||||||||||||    
T  3687407 gggtgcaaaatcgcacaattaacaaaagatagggggggaaaagtgcaattaagcc 3687353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 5735303 - 5735253
Alignment:
Q  56 gtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    ||||||||| |||||||| || |||||||||||  ||||||||||||||||    
T  5735303 gtgcaaaatcgcacaattagccaaagataggggagaaaagtgcaattaagc 5735253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 18864020 - 18863970
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||| ||||  |||||||| ||||||||||||||    
T  18864020 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaa 18863970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 18925230 - 18925280
Alignment:
Q  54 gggtgcaaaattgcacaattggc-aaaagatagggggaaaaagtgcaatta 103  Q
    ||||||||||| ||||||||||| ||||||||||||| |||||| ||||||    
T  18925230 gggtgcaaaatcgcacaattggcaaaaagatagggggcaaaagttcaatta 18925280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5349710 - 5349747
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgc 38  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  5349710 aatcagaaagggggtaaaaagatggggtgcaaaatcgc 5349747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 5735553 - 5735598
Alignment:
Q  59 caaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    |||||| ||||||||   ||||||||||||||||||||||||||||    
T  5735553 caaaatcgcacaattaataaaagatagggggaaaaagtgcaattaa 5735598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 6908265 - 6908213
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  ||| |||||||||| |||||||||||||||||    
T  6908265 gggtgcaaaatcgcacaattaacaatagataggggg-aaaagtgcaattaagcc 6908213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 13741610 - 13741557
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||| |||  |||||||| |||| ||||||||||||    
T  13741610 gggtgcaaaatcgcacaattggtaaactataggggggaaaaatgcaattaagcc 13741557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 13744234 - 13744286
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  13744234 gggtgcaaaatcgcacaattgacaaactataggggg-aaaagtgcaattaagcc 13744286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 29292042 - 29292095
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||| ||||| |||||||| ||||||| ||| || ||||||||||||||||||    
T  29292042 gggtggaaaatcgcacaattagcaaaagttagaggaaaaaagtgcaattaagcc 29292095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 35080012 - 35079960
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||   ||||||| ||||||||||||||| |||||||||||||||||    
T  35080012 gggtgcaaaaccccacaattagcaaaagataggggg-aaaagtgcaattaagcc 35079960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35080200 - 35080237
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgc 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  35080200 aatcagaaaggaggcaaaaagatggggtgcaaaatcgc 35080237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 37972013 - 37971960
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  | |||||  |||||||||||||||||    
T  37972013 gggtgcaaaatcgcacaattggcaaactacaggggagaaaagtgcaattaagcc 37971960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 38191435 - 38191387
Alignment:
Q  55 ggtgcaaaattgcacaattggc-aaaagatagggggaaaaagtgcaatta 103  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  38191435 ggtgcaaaatcgcacaattggcaaaaagata-ggggaaaaagtgcaatta 38191387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 38191566 - 38191619
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||| ||||  ||||||||||||| ||||| ||||||||||||    
T  38191566 gggtgcaaaatcgcataattaacaaaagataggggtaaaaaatgcaattaagcc 38191619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 48359372 - 48359320
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  48359372 gggtgcaaaatcgcacaattgacaaactataggggg-aaaagtgcaattaagcc 48359320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 18864404 - 18864455
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| ||||||||||||||  |||||||| |||||| ||||||||||    
T  18864404 ggtgcaaaatcgcacaattggcaaactataggggg-aaaagtacaattaagcc 18864455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 27096216 - 27096168
Alignment:
Q  57 tgcaaaattgcacaattggcaaaa-gatagggggaaaaagtgcaattaa 104  Q
    |||||||| |||||||||| |||| ||||||||| ||||||||||||||    
T  27096216 tgcaaaatcgcacaattggtaaaaagatagggggcaaaagtgcaattaa 27096168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 27182087 - 27182135
Alignment:
Q  57 tgcaaaattgcacaattggcaaaa-gatagggggaaaaagtgcaattaa 104  Q
    |||||||| |||||||||| |||| ||||||||| ||||||||||||||    
T  27182087 tgcaaaatcgcacaattggtaaaaagatagggggcaaaagtgcaattaa 27182135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 33628444 - 33628397
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaag 105  Q
    ||||||||||||||||| |||||||||| || | |||||||||||||||    
T  33628444 tgcaaaattgcacaattagcaaaagataaggag-aaaagtgcaattaag 33628397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 34235778 - 34235738
Alignment:
Q  67 cacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||| || || |||||||||||||||||    
T  34235778 cacaattggcaaaagatgggagggaaaagtgcaattaagcc 34235738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 38826915 - 38826967
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| ||||||||| ||||  |||||||| |||| ||||||||||||    
T  38826915 ggtgcaaaatcgcacaattgacaaactataggggggaaaaatgcaattaagcc 38826967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 3403937 - 3404043
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  3403937 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaa 3404036  T
Q  101 ttaagcc 107  Q
    |||||||    
T  3404037 ttaagcc 3404043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 18242104 - 18242210
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| ||||||||||||||||||||||  ||||| |||||    
T  18242104 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagatagggaaaaaaaatgcaa 18242203  T
Q  101 ttaagcc 107  Q
    |||||||    
T  18242204 ttaagcc 18242210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 21032081 - 21031979
Alignment:
Q  4 cagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaatta 103  Q
    |||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||| ||||||| ||||||| |||||||||||||    
T  21032081 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagttaggggg-aaaagtgcaatta 21031983  T
Q  104 agcc 107  Q
    ||||    
T  21031982 agcc 21031979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 30388312 - 30388413
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    |||||||||||||| |||||||||||||| ||||||||||||           ||||||||||| |||||||| |||||||||||||||||||||| |||    
T  30388312 aatcagaaagggggtaaaaagatggggtgcaaaatcgctcaa--aaaaaaagggggtgcaaaatcgcacaattagcaaaagatagggggaaaaagtacaa 30388409  T
Q  101 ttaa 104  Q
    ||||    
T  30388410 ttaa 30388413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 3403770 - 3403717
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  3403770 gggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaagcc 3403717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 33829043 - 33828990
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  33829043 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 33828990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 33829637 - 33829690
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  33829637 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 33829690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 10039728 - 10039676
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  10039728 gggtgcaaaatcgcacaattagcaaaagataggggg-aaaagtgcaattaagcc 10039676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 18241907 - 18241854
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  18241907 gggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcc 18241854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 31598227 - 31598326
Alignment:
Q  7 aaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    ||||||||||||||||||||||| ||||| ||||||           ||||||||||| |||||||| ||||||||||| |||||||| | |||||||||    
T  31598227 aaagggggcaaaaagatggggtgcaaaattgctcaaaaaaaaaagaagggtgcaaaatcgcacaattagcaaaagatagagggaaaaa-tacaattaagc 31598325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 7654549 - 7654602
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  7654549 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 7654602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 10087859 - 10087912
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  | |||||| |||||||||||||||||    
T  10087859 gggtgcaaaatcgcacaattggcaaactaaaggggggaaaagtgcaattaagcc 10087912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 11656783 - 11656836
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| |||||||||||| |  |||||||||||||||||    
T  11656783 gggtgcaaaatcgcacaattagcaaaagataggagagaaaagtgcaattaagcc 11656836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 21032285 - 21032334
Alignment:
Q  58 gcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  21032285 gcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcc 21032334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 33655116 - 33655168
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||||||||||| |||||||||| |||| | |||||||||||||||    
T  33655116 gggtgcaaaattgcacaattagcaaaagataagggg-acaagtgcaattaagcc 33655168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 33974300 - 33974353
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||| ||||||||||||    
T  33974300 gggtgcaaaatcgcacaattggcaaactataggggggaaaaatgcaattaagcc 33974353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 33658617 - 33658566
Alignment:
Q  54 gggtgcaaaattgcacaattggc-aaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||||||||||||||| ||||||||  ||| ||||||||||||||    
T  33658617 gggtgcaaaattgcacaattggcaaaaagataaagggcaaaagtgcaattaa 33658566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 3825579 - 3825530
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| |||||||| |||||| |||||||| ||||||||||||||    
T  3825579 gggtgcaaaatcgcacaattagcaaaatataggggg-aaaagtgcaattaa 3825530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 30388111 - 30388062
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||| |||||||| |||||||||||||||  ||||||||||||||||    
T  30388111 tgcaaaatcgcacaattagcaaaagataggggg-gaaagtgcaattaagcc 30388062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 2762660 - 2762611
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaa-gatagggggaaaaagtgcaatt 102  Q
    ||||||||||| |||||||| |||||| ||||||||| ||||||||||||    
T  2762660 gggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaatt 2762611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 10039844 - 10039893
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaa-gatagggggaaaaagtgcaatt 102  Q
    ||||||||||| |||||||| |||||| ||||||||| ||||||||||||    
T  10039844 gggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaatt 10039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 12714481 - 12714436
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaatt 102  Q
    |||||||| ||||||||  |||||||||||||| ||||||||||||    
T  12714481 tgcaaaatcgcacaattaacaaaagatagggggcaaaagtgcaatt 12714436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 13579652 - 13579704
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| ||||| ||||||| | |||||||||||||||||    
T  13579652 gggtgcaaaatcgcacaattagcaaacgatagggag-aaaagtgcaattaagcc 13579704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 23250644 - 23250592
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||| ||  |||||||| ||||||||||||| ||||||||||||||||||    
T  23250644 gggtgcaagatctcacaattgacaaaagatagggg-aaaaagtgcaattaagcc 23250592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 18433121 - 18433015
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  18433121 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagatggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaa 18433022  T
Q  101 ttaagcc 107  Q
    |||||||    
T  18433021 ttaagcc 18433015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 25115863 - 25115757
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           |||||||||||  ||||||||||||||||||||||| ||||||||||    
T  25115863 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaaaagggggtgcaaaatcacacaattggcaaaagataggggggaaaagtgcaa 25115764  T
Q  101 ttaagcc 107  Q
    |||||||    
T  25115763 ttaagcc 25115757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 25174955 - 25174849
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           |||||||||||  ||||||||||||||||||||||| ||||||||||    
T  25174955 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaaaagggggtgcaaaatcacacaattggcaaaagataggggggaaaagtgcaa 25174856  T
Q  101 ttaagcc 107  Q
    |||||||    
T  25174855 ttaagcc 25174849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 26020556 - 26020450
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    |||||||||||||||||||||||| |||| ||||||||||||           ||||||||||| |||||||| ||||||||||||| | ||||||||||    
T  26020556 aatcagaaagggggcaaaaagatgcggtgcaaaatcgctcaaaaaaaaagatggggtgcaaaatcgcacaattagcaaaagatagggaggaaaagtgcaa 26020457  T
Q  101 ttaagcc 107  Q
    |||||||    
T  26020456 ttaagcc 26020450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 18817612 - 18817665
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  18817612 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaagtgcaattaagcc 18817665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 16726130 - 16726084
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaat 101  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  16726130 ggtgcaaaatcgcacaattggcaaaagatagggggcaaaagtgcaat 16726084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 5187831 - 5187884
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||||||  ||||||||| |||| |||||||||||||||||    
T  5187831 gggtgcaaaattgcacaattaacaaaagataaggggcaaaagtgcaattaagcc 5187884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 12498620 - 12498567
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  12498620 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 12498567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 12498929 - 12498982
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  12498929 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 12498982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 18433317 - 18433370
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  18433317 gggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcc 18433370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 18817005 - 18816952
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||| ||||||||||||    
T  18817005 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaaatgcaattaagcc 18816952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 22429197 - 22429249
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||    
T  22429197 gggtgcaaaatcgcacaattagcaaaagatagggggaaaaa-tgcaattaagcc 22429249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 25116062 - 25116115
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  25116062 gggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcc 25116115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 25175152 - 25175205
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  25175152 gggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcc 25175205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 26571165 - 26571218
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  26571165 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 26571218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 33324839 - 33324892
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  |||||||| ||||||||||||| ||||||||||||||||||    
T  33324839 gggtgcaaaatcacacaattgacaaaagataggggaaaaaagtgcaattaagcc 33324892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34576971 - 34576930
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaa 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  34576971 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaa 34576930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 34147512 - 34147564
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| ||||||||| ||||  ||||||||||||||||||||||||||    
T  34147512 ggtgcaaaatcgcacaattgacaaactatagggggaaaaagtgcaattaagcc 34147564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 9665608 - 9665560
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  9665608 gggtgcaaaattgcacaattagcaaaagatagggg--aaaagtgcaattaa 9665560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 11351428 - 11351478
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||||||||||||||| |  ||||||||||||||    
T  11351428 gggtgcaaaatcgcacaattggcaaaagataggagtgaaaagtgcaattaa 11351478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 16466746 - 16466796
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||| |||||||| |||||| |||||||| |||||||||||||||||    
T  16466746 tgcaaaatcgcacaattagcaaaatataggggggaaaagtgcaattaagcc 16466796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 21207279 - 21207229
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||||||||  |||||||| ||||||||||||||    
T  21207279 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 21207229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 11350860 - 11350808
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||| ||||||||||||    
T  11350860 gggtgcaaaat-gcacaattggcaaaagataggggtgaaaaatgcaattaagcc 11350808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 19514964 - 19515017
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  19514964 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 19515017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 22428986 - 22428934
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| |||||||||||||||  ||||||||||||||||    
T  22428986 gggtgcaaaatcgcacaattagcaaaagataggggg-gaaagtgcaattaagcc 22428934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22429173 - 22429210
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgc 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  22429173 aatcagaaagggggcaaaaagatggggtgcaaaatcgc 22429210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 23011131 - 23011079
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||    
T  23011131 gggtgcaaaatcgcacaattagcaaaagataaggggaaaaa-tgcaattaagcc 23011079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 31569958 - 31569910
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||||||    
T  31569958 ggtgcaaaatcgcacaattgacaaaagataggggg-aaaagtgcaattaa 31569910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 34577165 - 34577217
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  ||||||| |||||||||| ||||||||||||||||||||||    
T  34577165 gggtgcaaaatcacacaattagcaaaagata-ggggaaaaagtgcaattaagcc 34577217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 22729441 - 22729492
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    ||||||||||| ||||||||||||||  |||||||| ||||||||||||||||    
T  22729441 gggtgcaaaatcgcacaattggcaaattataggggg-aaaagtgcaattaagc 22729492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 22629525 - 22629576
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagg-gggaaaaagtgcaattaa 104  Q
    |||||||||||| || ||||| ||||||||||| ||||||||||||||||||    
T  22629525 gggtgcaaaattacataattgacaaaagataggagggaaaaagtgcaattaa 22629576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 10098569 - 10098519
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||| ||||||||| ||||  ||||| ||||||||||||||||||||    
T  10098569 tgcaaaatcgcacaattgacaaactataggaggaaaaagtgcaattaagcc 10098519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 3888292 - 3888239
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| | ||||||||||||  |||||||| ||| |||||||||||||    
T  3888292 gggtgcaaaatcgtacaattggcaaactataggggggaaatgtgcaattaagcc 3888239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5187628 - 5187591
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgc 38  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  5187628 aatcagaaaggggacaaaaagatggggtgcaaaatcgc 5187591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 9665828 - 9665879
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||    
T  9665828 gggtgcaaaat-gcacaattagcaaaagataggggg-aaaagtggaattaagcc 9665879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 25940574 - 25940521
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  ||||||| ||||| ||||||||||||    
T  25940574 gggtgcaaaatcgcacaattgacaaactataggggaaaaaaatgcaattaagcc 25940521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 26570782 - 26570729
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| ||||||| |||||||||    
T  26570782 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgtaattaagcc 26570729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 37610254 - 37610202
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  |||||||||||||  |||||||| |||||||||||||||||    
T  37610254 gggtgcaaaatcacacaattggcaaactataggggg-aaaagtgcaattaagcc 37610202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 37780372 - 37780320
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  |||||||||||||  |||||||| |||||||||||||||||    
T  37780372 gggtgcaaaatcacacaattggcaaactataggggg-aaaagtgcaattaagcc 37780320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 41383168 - 41383220
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| |||||| |||||||| |||||| ||||||||||    
T  41383168 gggtgcaaaatcgcacaattagcaaaaaataggggg-aaaagttcaattaagcc 41383220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 12441093 - 12441042
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||||||||||   |||||||| ||| ||||||||||||||||||    
T  12441093 ggtgcaaaattgcacaattaataaaagata-gggaaaaaagtgcaattaagcc 12441042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 12441265 - 12441301
Alignment:
Q  6 gaaagggggcaaaaagatggggtgtaaaatcgctcaa 42  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  12441265 gaaagggggcaaaaatatggggtgcaaaatcgctcaa 12441301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 23011261 - 23011309
Alignment:
Q  57 tgcaaaattgcacaattggc-aaaagatagggggaaaaagtgcaattaa 104  Q
    |||||||| ||||||||||| ||||||||||||| |||| |||||||||    
T  23011261 tgcaaaatcgcacaattggctaaaagatagggggcaaaattgcaattaa 23011309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 43464194 - 43464245
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  43464194 ggtgcaaaatcgcacaattgacaaactataggggg-aaaagtgcaattaagcc 43464245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 20968968 - 20969073
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  20968968 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaa-aaaaaaaaaggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaa 20969066  T
Q  101 ttaagcc 107  Q
    |||||||    
T  20969067 ttaagcc 20969073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 10293714 - 10293608
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| ||||||||| ||||||||||||| ||||| |||||    
T  10293714 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagataggggaaaaaaatgcaa 10293615  T
Q  101 ttaagcc 107  Q
    |||||||    
T  10293614 ttaagcc 10293608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 18874935 - 18874882
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  18874935 gggtgcaaaatcgcacaattagcaaaagatagggggaaaaagtgcaattgagcc 18874882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 47666336 - 47666389
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||||||||||||  |||||||| |||||||||||||||||    
T  47666336 gggtgcaaaattgcacaattggcaaactataggggggaaaagtgcaattaagcc 47666389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 1927825 - 1927772
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||    
T  1927825 gggtgcaaaatcgcataattggcaaaagataggggggaaaggtgcaattaagcc 1927772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 10293910 - 10293963
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  10293910 gggtgcaaaatcgcacaattaacaaaagataggggggaaaagtgcaattaagcc 10293963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 17372351 - 17372298
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| |||||| |||||||||||| |||||||||||||    
T  17372351 gggtgcaaaatcgcacaattagcaaaaaatagggggaaaaggtgcaattaagcc 17372298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 18875192 - 18875245
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| | |||||| ||||||||||||||| |||||||||||||||||    
T  18875192 gggtgcaaaatcgtacaattagcaaaagatagggggcaaaagtgcaattaagcc 18875245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 47871123 - 47871175
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  47871123 gggtgcaaaatcgcacaattagcaaaagataggggg-aaaagtgcaattaagcc 47871175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 48159950 - 48159897
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  48159950 gggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcc 48159897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 53766580 - 53766633
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||||||||||| |||||  |||||||| |||||||||||||||||    
T  53766580 gggtgcaaaattgcacaatttgcaaactataggggggaaaagtgcaattaagcc 53766633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 3644588 - 3644538
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    |||||||||||| ||||||| ||||||||||| | ||||||||||||||||    
T  3644588 gggtgcaaaattacacaattagcaaaagatagagagaaaaagtgcaattaa 3644538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18874995 - 18874957
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgct 39  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  18874995 aatcagaaagggggcaaaaagatggggtgcaaaatcgct 18874957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 21895711 - 21895657
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatag-ggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  |||||||||||||| |||| ||||||||||||||||||||||    
T  21895711 gggtgcaaaatcacacaattggcaaaacatagtggggaaaaagtgcaattaagcc 21895657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 8314066 - 8314013
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||| |||||||  |||||||||||||||||    
T  8314066 gggtgcaaaatcgcacaattgacaaaatataggggagaaaagtgcaattaagcc 8314013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 9026838 - 9026739
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    |||||||||||||| |||||||||||||| ||||||||||||           ||||||||||||||||||||  ||||||||||| ||||||| |||||    
T  9026838 aatcagaaaggggg-aaaaagatggggtgcaaaatcgctcaa--aaaataaaggggtgcaaaattgcacaattaacaaaagataggaggaaaaa-tgcaa 9026743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 9027034 - 9027086
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||| |||||||||    
T  9027034 gggtgtaaaattgcacaattagcaaaagataggggg-aaaagtgaaattaagcc 9027086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 10348800 - 10348853
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||| | ||||||||||||||||||||    
T  10348800 gggtgcaaaatcgcacaattggcaaactatatgaggaaaaagtgcaattaagcc 10348853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 20968771 - 20968718
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||  |||||||||||||| ||| |||||||||||||    
T  20968771 gggtgcaaaatcgcacaattaacaaaagataggggggaaaggtgcaattaagcc 20968718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 40848962 - 40849015
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||| ||| |||||||||||||||||    
T  40848962 gggtgcaaaatcgcacaattggcaaactatagaggggaaaagtgcaattaagcc 40849015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 42673030 - 42672978
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  42673030 gggtgcaaaatcgcacaattggcaaactataggggg-aaaagtgcaattaagcc 42672978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 45060872 - 45060925
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||| ||||| |||||||| ||||||||||||||  |||||||||||||||||    
T  45060872 gggtgtaaaatcgcacaattagcaaaagataggggtgaaaagtgcaattaagcc 45060925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 48160334 - 48160387
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||||||||  ||||||||||||||||    
T  48160334 gggtgcaaaatcgcacaattggcaaactatagggggggaaagtgcaattaagcc 48160387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 53687941 - 53687888
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  53687941 gggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 53687888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 22429211 - 22429159
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    ||||||||| | ||||||||||||||| |||||||  ||||||||||||||||    
T  22429211 gggtgcaaagtcgcacaattggcaaaatataggggagaaaagtgcaattaagc 22429159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 26007622 - 26007670
Alignment:
Q  56 gtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||| | ||||||||||||  |||||||||||||||||||||||    
T  26007622 gtgcaaaatcgtacaattggcaaactatagggggaaaaagtgcaattaa 26007670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 47665963 - 47665911
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||| ||||||||| ||||  ||| ||||||||||||||||||||||    
T  47665963 ggtgcaaaatcgcacaattgacaaactataaggggaaaaagtgcaattaagcc 47665911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 13657622 - 13657673
Alignment:
Q  54 gggtgcaaaattgcacaattggc-aaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||||| ||||||||||||  ||||||||||||||    
T  13657622 gggtgcaaaatcgcacaattggcaaaaagataggggacaaaagtgcaattaa 13657673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 1928435 - 1928484
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| |||||||||||||||||||||| | |||| |||||||||    
T  1928435 gggtgcaaaatcgcacaattggcaaaagatagggaggaaaa-tgcaattaa 1928484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 23630036 - 23630086
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||  ||||| ||||| |||||||||||||||||    
T  23630036 gggtgcaaaatcgcacaattaccaaaaaataggaggaaaaagtgcaattaa 23630086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 26540743 - 26540694
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||||||||||||| ||||| ||| |||| ||||||||||||||    
T  26540743 gggtgcaaaattgcacaattgacaaaaaata-ggggcaaaagtgcaattaa 26540694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 27238901 - 27238951
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||||||||  |||| ||| ||||||||||||||    
T  27238901 gggtgcaaaatcgcacaattggcaaactatagaggggaaaagtgcaattaa 27238951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 47870876 - 47870823
Alignment:
Q  54 gggtgcaaaatt-gcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||    
T  47870876 gggtgcaaaattcgcataattagcaaaagatagggg-aaaaagtgcaattaagcc 47870823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 53766216 - 53766166
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| ||||||||| ||||  ||||| |||||||||||||||||    
T  53766216 gggtgcaaaatcgcacaattgacaaactataggaggaaaaagtgcaattaa 53766166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 3353180 - 3353128
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  3353180 gggtgcaaaatcgcacaattgacaaactataggggg-aaaagtgcaattaagcc 3353128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 8315083 - 8315135
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||| ||||||||  ||||||||||||||||    
T  8315083 gggtgcaaaatcgcacaattgacaaaatataggggg-gaaagtgcaattaagcc 8315135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 21896512 - 21896564
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||| ||| ||||||||| ||||||||||||    
T  21896512 gggtgcaaaatcgcacaattgacaaaatata-ggggaaaaaatgcaattaagcc 21896564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 24485461 - 24485513
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||| | |||||||||||||||||    
T  24485461 gggtgcaaaatcgcacaattggcaaactatagggag-aaaagtgcaattaagcc 24485513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 27238518 - 27238465
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||||| || |||||| ||||||||||    
T  27238518 gggtgcaaaatcgcacaattggcaaactataggagggaaaagtacaattaagcc 27238465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 40848573 - 40848521
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||| ||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  40848573 gggtgtaaaatcgcacaattggcaaactataggggg-aaaagtgcaattaagcc 40848521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 42455839 - 42455790
Alignment:
Q  58 gcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  42455839 gcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 42455790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 42673297 - 42673349
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  42673297 gggtgcaaaatcgcacaattgacaaactataggggg-aaaagtgcaattaagcc 42673349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 18875065 - 18875017
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaa-gatagggggaaaaagtgcaatt 102  Q
    |||||||||| |||||||| |||||| ||||||||| ||||||||||||    
T  18875065 ggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaatt 18875017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 44008403 - 44008454
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||||||||||||||||  |||||  | |||||||||||||||||    
T  44008403 ggtgcaaaattgcacaattggcaaactataggatg-aaaagtgcaattaagcc 44008454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 45060644 - 45060596
Alignment:
Q  59 caaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||| ||| |||| ||||||||||| ||| |||||||||||||||||    
T  45060644 caaaatcgcataattagcaaaagatagtggggaaaagtgcaattaagcc 45060596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 6645 - 6750
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||           ||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  6645 aatcagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggggg-aaaagtgcaa 6743  T
Q  101 ttaagcc 107  Q
    |||||||    
T  6744 ttaagcc 6750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 6447 - 6394
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  6447 gggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaagcc 6394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 25317 - 25423
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||| ||||||||||||||||||| ||||||||||||           ||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  25317 aatcagaaatggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaa 25416  T
Q  101 ttaagcc 107  Q
    |||||||    
T  25417 ttaagcc 25423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 38696 - 38749
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  38696 gggtgcaaaatcgcacaattggcaaactatagggggaaaaagtgcaattaagcc 38749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 438983 - 438930
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  438983 gggtgcaaaatcgcacaattagcaaaagataggggggaaaagtgcaattaagcc 438930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 439203 - 439253
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  439203 tgcaaaatcgcacaattagcaaaagataaggggaaaaagtgcaattaagcc 439253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 183416 - 183367
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaa 104  Q
    ||||||||||| | ||||||| |||||||||||||| ||||||||||||||    
T  183416 gggtgcaaaatcgtacaattgacaaaagataggggg-aaaagtgcaattaa 183367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 183670 - 183716
Alignment:
Q  61 aaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||| |||||||| |||||| |||||||| |||||||||||||||||    
T  183670 aaatcgcacaattagcaaaatataggggggaaaagtgcaattaagcc 183716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 183544 - 183592
Alignment:
Q  57 tgcaaaattgcacaattggcaaaa-gatagggggaaaaagtgcaattaa 104  Q
    |||||||| |||||||||| |||| ||||||||| ||||||||||||||    
T  183544 tgcaaaatcgcacaattggtaaaaagatagggggcaaaagtgcaattaa 183592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 17158 - 17209
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  17158 ggtgcaaaattgcacaattagcaaaagataggggg-aaaagtgcaattaagcc 17209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16959 - 16918
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaa 42  Q
    |||||||||||| | |||||||||||||| ||||||||||||    
T  16959 aatcagaaagggaggaaaaagatggggtgcaaaatcgctcaa 16918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 10062 - 10012
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||| | |||||||||||||||||||||| |||||||||||||||||    
T  10062 tgcaaaatcgtacaattggcaaaagatagggggcaaaagtgcaattaagcc 10012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 6796 - 6849
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||||||||||||||||||  |||| ||||||||||||    
T  6796 gggtgcaaaatcgcacaattggcaaaagataggggtgaaaaatgcaattaagcc 6849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 6257 - 6152
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    |||||||||||||| |||||||||||||| |||||||||||            ||||| ||||| |||||||| ||||||||||| ||  ||||||||||    
T  6257 aatcagaaaggggg-aaaaagatggggtgcaaaatcgctcatttaaaaatatggggtgtaaaatcgcacaattagcaaaagatagaggtgaaaagtgcaa 6159  T
Q  101 ttaagcc 107  Q
    |||||||    
T  6158 ttaagcc 6152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 9958 - 9905
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||| ||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  9958 gggtgaaaaatcgcacaattggcaaactatagggggaaaaagtgcaattaagcc 9905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 412027 - 411923
Alignment:
Q  1 aatcagaaagggggcaaaaagatggggtgtaaaatcgctcaacnnnnnnnnnngggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaa 100  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||           ||||||||||| ||||||||| ||||||||||||||  |||||||||    
T  412027 aatcagaaagggggcaaaaagatagggtgcaaaatcgcttaa-aaaaaagagggggtgcaaaatcgcacaattgacaaaagataggggg-taaagtgcaa 411930  T
Q  101 ttaagcc 107  Q
    |||||||    
T  411929 ttaagcc 411923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1221 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1221
Description:

Target: scaffold1221; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 1563 - 1511
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||||||  |||||||||||||||||| | ||||||||||||||||||||    
T  1563 gggtgcaaaatcacacaattggcaaaagata-gaggaaaaagtgcaattaagcc 1511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 764 - 816
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||    
T  764 gggtgcaaaatcgcacaattggcaaactata-ggggaaaaagtgcaattaagcc 816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 380 - 330
Alignment:
Q  57 tgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||||||| ||||||||| ||||  |||||||| |||||||||||||||||    
T  380 tgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcc 330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 7507 - 7455
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||    
T  7507 gggtgcaaaatcgcataattagcaaaagata-ggggaaaaagtgcaattaagcc 7455  T

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Target: scaffold0376; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 7601 - 7653
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    |||| |||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  7601 gggtacaaaatcgcacaattagcaaaagata-ggggaaaaagtgcaattaagcc 7653  T

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Target: scaffold0069 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 50508 - 50560
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  50508 gggtgcaaaatcgcacaattggcaaactataggggg-aaaagtgcaattaagcc 50560  T

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Target: scaffold0069; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 50126 - 50075
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||||||||||||| ||||  ||||||||  ||||||||||||||||    
T  50126 gggtgcaaaattgcacaattgacaaactataggggg--aaagtgcaattaagcc 50075  T

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Target: scaffold0017 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 185275 - 185328
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| ||||||||||||||  |||||| | |||||||||||||||||    
T  185275 gggtgcaaaatcgcacaattggcaaactatagggaggaaaagtgcaattaagcc 185328  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 205739 - 205687
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagcc 107  Q
    ||||||||||| |||||||| ||||||||||||| |||||| ||||||||||||    
T  205739 gggtgcaaaatcgcacaattagcaaaagatagggagaaaaa-tgcaattaagcc 205687  T

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Target: scaffold0598 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 6877 - 6927
Alignment:
Q  54 gggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  6877 gggtgcaaaat-gcacaattggcaaaagataggggg-gaaagtgcaattaagc 6927  T

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Target: scaffold0035 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 73018 - 72967
Alignment:
Q  55 ggtgcaaaattgcacaattggcaaaagatagggggaaaaagtgcaattaagc 106  Q
    ||||||||||||||||||| ||||||||||  ||| |||| |||||||||||    
T  73018 ggtgcaaaattgcacaattagcaaaagataaaggggaaaaatgcaattaagc 72967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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