View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19988_low_11 (Length: 306)
Name: NF19988_low_11
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19988_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 23514283 - 23514570
Alignment:
| Q |
1 |
atcaattggtttatccaactgtttgatatatgccttagttccatcgattgaagaaacctcaatttcatcattcatttgaaggattggtggagctacagat |
100 |
Q |
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| T |
23514283 |
atcaattggtttatccaactgtttgatatatgccctagttccatcgattgaagaaacctcaatttcatcattcatttgaaggattggtggagctacagat |
23514382 |
T |
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| Q |
101 |
gatgtcatgttagtaacattgacattattcctcaaagatggcataggaggttgtgaagcaacaacctggaggctagggtttgaaaattgattgattcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
23514383 |
gatgtcatgttagtaacattgacattattcctcaaagatggcataggaggttgtgaagcaacaacctggaggctaggatttgaaaattgattgactcttg |
23514482 |
T |
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| Q |
201 |
gttgagagatcaacaaagcttgttgttgttgaggttcttgaaaagctctgtttccagcaaaatttccatcagttccatgcatcaacat |
288 |
Q |
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| T |
23514483 |
gttgagagatcaacaaagcttgttgttgttgaggttcttgaaaagctctgtttccagcaaagtttccatcagttccatgcatcaacat |
23514570 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 33709768 - 33709834
Alignment:
| Q |
5 |
attggtttatccaactgtttgatatatgccttagttccatcgattgaagaaacctcaatttcatcat |
71 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||| | || |||||| || || ||||||| |
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| T |
33709768 |
attggtttgtccaactgattgatatatgccttagttccatcaactggagaaacatccatgtcatcat |
33709834 |
T |
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