View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19988_low_13 (Length: 266)

Name: NF19988_low_13
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19988_low_13
NF19988_low_13
[»] chr8 (16 HSPs)
chr8 (15-203)||(4995855-4996043)
chr8 (1-80)||(4913855-4913934)
chr8 (15-80)||(4776920-4776985)
chr8 (30-113)||(4688645-4688728)
chr8 (15-78)||(4890318-4890381)
chr8 (15-69)||(4904743-4904797)
chr8 (30-82)||(4681048-4681100)
chr8 (16-57)||(4703372-4703413)
chr8 (15-80)||(4714699-4714764)
chr8 (26-74)||(4875558-4875606)
chr8 (15-80)||(10446414-10446481)
chr8 (11-50)||(4925329-4925368)
chr8 (53-124)||(4745376-4745451)
chr8 (15-69)||(10452083-10452139)
chr8 (1-69)||(21439775-21439843)
chr8 (15-49)||(4736439-4736473)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 4996043 - 4995855
Alignment:
Q  15 accagatgtggtcataaacatcatctttgtacctgttgtttgtacatgaccaaaataattatcagttatatatataaatattaaagtaagctacttaatt 114  Q
    |||||||  |||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||| ||||||    
T  4996043 accagattcggtcgtaaacatcatctttgtacctgttgtttgtacatgaccaaaaatattatcagttatttatataaatattacagtaagctaattaatt 4995944  T
Q  115 aattaatgtgattgtactagcccactccatcttacctgtattcaatgtctgctgtggaatctaaataacatcgcttgaagagtgataat 203  Q
    |||||||||| || |||||||| ||||||||||||||||||||  ||||||| |||||| |||||||| |||  |||||||||||||||    
T  4995943 aattaatgtgcttatactagccgactccatcttacctgtattctttgtctgcggtggaacctaaataatatctattgaagagtgataat 4995855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4913855 - 4913934
Alignment:
Q  1 taatttacacggcgaccagatgtggtcataaacatcatctttgtacctgttgtttgtacatgaccaaaataattatcagt 80  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||    
T  4913855 taattcacaaggcgaccagatgcggtcataaacatcatctttgtacctgttgtttgtacatggccaaaaaaattgtcagt 4913934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 4776920 - 4776985
Alignment:
Q  15 accagatgtggtcataaacatcatctttgtacctgttgtttgtacatgaccaaaataattatcagt 80  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  4776920 accacatgcggtcataaacatcatctttgtacctgttgtttgtacatgaccaaagaaattatcagt 4776985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 4688728 - 4688645
Alignment:
Q  30 aaacatcatctttgtacctgttgtttgtacatgaccaaaataattatcagttatatatataaatattaaagtaagctacttaat 113  Q
    ||||||||||||||||||||||||||| |||||||||||| || ||||| |||  ||| ||||||||||||| ||||| |||||    
T  4688728 aaacatcatctttgtacctgttgtttgcacatgaccaaaagaaatatcatttacttatgtaaatattaaagttagctaattaat 4688645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 4890318 - 4890381
Alignment:
Q  15 accagatgtggtcataaacatcatctttgtacctgttgtttgtacatgaccaaaataattatca 78  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  4890318 accagatgcggtcaaaaacatcatctttgtacctgttgtttgtacatgaccaagaaaattatca 4890381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 4904743 - 4904797
Alignment:
Q  15 accagatgtggtcataaacatcatctttgtacctgttgtttgtacatgaccaaaa 69  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  4904743 accagatgcggtcataaacatcatctttgtacctattgtttgtacatgaccaaaa 4904797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 4681100 - 4681048
Alignment:
Q  30 aaacatcatctttgtacctgttgtttgtacatgaccaaaataattatcagtta 82  Q
    |||||||||||||||||||||||||||||||||| ||||| || |||||||||    
T  4681100 aaacatcatctttgtacctgttgtttgtacatgaacaaaaaaaatatcagtta 4681048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 4703413 - 4703372
Alignment:
Q  16 ccagatgtggtcataaacatcatctttgtacctgttgtttgt 57  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  4703413 ccagatgcggtcataaacatcatctttgtacctgttgtttgt 4703372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 4714764 - 4714699
Alignment:
Q  15 accagatgtggtcataaacatcatctttgtacctgttgtttgtacatgaccaaaataattatcagt 80  Q
    |||||||  ||||||||||||||||||||||||| |||| ||||||| ||||| | ||||||||||    
T  4714764 accagatccggtcataaacatcatctttgtacctattgtatgtacattaccaagacaattatcagt 4714699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 4875558 - 4875606
Alignment:
Q  26 tcataaacatcatctttgtacctgttgtttgtacatgaccaaaataatt 74  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| ||||    
T  4875558 tcatgaacatcatctttgtacctgttgtttatacatgaccaaaaaaatt 4875606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 10446481 - 10446414
Alignment:
Q  15 accagatgtggtcataaacatcatctttgtacc--tgttgtttgtacatgaccaaaataattatcagt 80  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||| ||||||||||| | ||||||||    
T  10446481 accagatgcggtcaaaaacatcatctttgtacctgtgttgtttgttcatgaccaaaaaacttatcagt 10446414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 4925329 - 4925368
Alignment:
Q  11 ggcgaccagatgtggtcataaacatcatctttgtacctgt 50  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  4925329 ggcgaccagatgcggtcataaacatcatctttgtacctgt 4925368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 4745451 - 4745376
Alignment:
Q  53 tttgtacatgaccaaaataattatcagttatatat----ataaatattaaagtaagctacttaattaattaatgtg 124  Q
    ||||||| || |||||| ||||||||||||| |||    ||||||||| |||||||||| ||||||||||||||||    
T  4745451 tttgtacctggccaaaaaaattatcagttatttatttatataaatatttaagtaagctaattaattaattaatgtg 4745376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 10452139 - 10452083
Alignment:
Q  15 accagatgtggtcataaacatcatctttgtacc--tgttgtttgtacatgaccaaaa 69  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||| |||||||||||    
T  10452139 accagatgcggtcaaaaacatcatctttgtacctgtgttgtttgttcatgaccaaaa 10452083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 21439775 - 21439843
Alignment:
Q  1 taatttacacggcgaccagatgtggtcataaacatcatctttgtacctgttgtttgtacatgaccaaaa 69  Q
    |||||||||||||  |||| || ||||||||||||| | | |||||||| |||||||||||| ||||||    
T  21439775 taatttacacggcatccagttgcggtcataaacatcctttctgtacctgatgtttgtacatggccaaaa 21439843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 4736473 - 4736439
Alignment:
Q  15 accagatgtggtcataaacatcatctttgtacctg 49  Q
    |||||||| ||||||||||||||||||||||||||    
T  4736473 accagatgcggtcataaacatcatctttgtacctg 4736439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University