View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19988_low_17 (Length: 249)
Name: NF19988_low_17
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19988_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 17771097 - 17771173
Alignment:
| Q |
66 |
tcaagtggtagaatttgtttccctaactttaagggaaactaacttctaatttgtaccatttcttgttgttggtgtta |
142 |
Q |
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| T |
17771097 |
tcaagtggtagaatttgtttccctaactttaagggaaactaacttctaatttgtaccatttcttgttgttggtgtta |
17771173 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 17771214 - 17771268
Alignment:
| Q |
183 |
cttgtcttcttgtttgttagaatgagacaatataggcaccgacctcatcaatatt |
237 |
Q |
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| T |
17771214 |
cttgtcttcttgtttgttagaatgagacaatataggcaccgacctcatcaatatt |
17771268 |
T |
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