View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19988_low_18 (Length: 248)
Name: NF19988_low_18
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19988_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 42868922 - 42869154
Alignment:
| Q |
1 |
acaaagaacaatagaaaataccacatgctaatgaataattctgttttaacttaaaaatatggttttaaattgcggtccacagccgcagtataacatattt |
100 |
Q |
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| T |
42868922 |
acaaagaacaatagaaaataccacatgctaatgaataattctgttttaacttaaaaatatggttttaaattgcggtccacaaccgcagtataacatattt |
42869021 |
T |
|
| Q |
101 |
tgaggtctccgcaacggcgtcacaactcacaaccacaatttcgaccaaattttgctgcaatacaaaggttcacagcaaatggaaactaaactgattcacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42869022 |
tgaggtctccgcaacggcgtcacaactcacaaccacaatttcgaccaaattttgctgcaatacaaaggttcacagcgaatggaaactaaactgattcacc |
42869121 |
T |
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| Q |
201 |
atatttataaatcaatcaaataaaggcaatgca |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42869122 |
atatttataaatcaatcaaataaaggcaatgca |
42869154 |
T |
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