View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19988_low_2 (Length: 573)
Name: NF19988_low_2
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19988_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 189 - 573
Target Start/End: Complemental strand, 4892991 - 4892607
Alignment:
| Q |
189 |
ttgtgattaattgatttttaaaaagtaaatcaaataatcaagaacaatatattggaaagtacctacaacaagtctattgcctggacggtatagatgatgg |
288 |
Q |
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| T |
4892991 |
ttgtgattaattgatttttaaaaagtaaatcaattaatcaagaacaatatattggaaagtacctacaacaaatttattgcttggaaggtatagatgatgg |
4892892 |
T |
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| Q |
289 |
agacatactctcattggttaagatcggatgtcaactctaccttacagctgactatattcatttaataatattttaatacttttacaatttttctatatgc |
388 |
Q |
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| T |
4892891 |
agacatactctcattggttaagatcggatgtcaactctaccttacagctgactatattcgtttaataatattttaatacttttacaatttttctatatgc |
4892792 |
T |
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| Q |
389 |
gagaggataactggataagtacagttgcaagcattttaatannnnnnnnnggacgcaggatttgaaatttaattgaaattcatttcttatcttaaaatgc |
488 |
Q |
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| T |
4892791 |
gagaggataactggataagtacagttgcaagcattttaatttttttttttggacgcaggatttgaaatttaattgaaattcatttcttatcttaaaatgc |
4892692 |
T |
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| Q |
489 |
taagttgcataaacgaaattctaaaaatgacaccaataacnnnnnnnnnaagatgctaaacaaaatatttaaaaaaccaacacac |
573 |
Q |
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| T |
4892691 |
taagttgcataaaagaaattctaaaaatgacactaataattttttttttaagatgctaaacaaaatatttaaaaaaccaacacac |
4892607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 4893506 - 4893378
Alignment:
| Q |
17 |
atgatggaaaaatataatttatagtaactcttgtgagacatgccccttgttagtaagatcttcacatttgtttgcttctctttaaatataatatgatatg |
116 |
Q |
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| T |
4893506 |
atgatgggaaaatataatttatagtaactcttgtgagacacgccccttgttagtaaggtcttcacatttgtttgcttctctttaaatatgatatgatatg |
4893407 |
T |
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| Q |
117 |
ataggtaagagttctccatgaagaaagtt |
145 |
Q |
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| T |
4893406 |
ataggtaagagttctccatgaagaaagtt |
4893378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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