View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19988_low_3 (Length: 563)

Name: NF19988_low_3
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19988_low_3
NF19988_low_3
[»] chr2 (7 HSPs)
chr2 (17-553)||(12694421-12694957)
chr2 (394-446)||(12133967-12134019)
chr2 (384-451)||(28425633-28425700)
chr2 (386-450)||(11912683-11912747)
chr2 (384-459)||(21665619-21665694)
chr2 (390-435)||(44914846-44914891)
chr2 (391-443)||(37182760-37182812)
[»] chr1 (5 HSPs)
chr1 (390-451)||(45758623-45758684)
chr1 (384-438)||(38853645-38853699)
chr1 (388-448)||(35392393-35392453)
chr1 (316-359)||(47896001-47896045)
chr1 (391-447)||(50146424-50146480)
[»] chr5 (5 HSPs)
chr5 (391-451)||(10407578-10407638)
chr5 (388-459)||(35080687-35080758)
chr5 (390-460)||(27530610-27530680)
chr5 (391-452)||(40794248-40794309)
chr5 (390-446)||(33037898-33037954)
[»] scaffold1590 (1 HSPs)
scaffold1590 (384-458)||(177-251)
[»] chr4 (4 HSPs)
chr4 (384-436)||(5893127-5893179)
chr4 (384-456)||(11906822-11906894)
chr4 (384-436)||(39329332-39329384)
chr4 (392-458)||(24614077-24614143)
[»] chr7 (7 HSPs)
chr7 (392-451)||(26917656-26917715)
chr7 (391-462)||(6765598-6765669)
chr7 (384-458)||(18201246-18201319)
chr7 (384-458)||(23744906-23744980)
chr7 (394-459)||(12419412-12419477)
chr7 (384-457)||(23020404-23020476)
chr7 (392-436)||(9014119-9014163)
[»] chr8 (6 HSPs)
chr8 (385-447)||(5973037-5973099)
chr8 (384-433)||(34789806-34789855)
chr8 (384-451)||(4097815-4097882)
chr8 (391-458)||(38009070-38009137)
chr8 (384-457)||(7944442-7944515)
chr8 (384-429)||(8103024-8103069)
[»] chr6 (2 HSPs)
chr6 (391-445)||(27131131-27131185)
chr6 (391-468)||(20611908-20611985)
[»] chr3 (1 HSPs)
chr3 (386-460)||(36179474-36179548)
[»] scaffold0012 (1 HSPs)
scaffold0012 (384-455)||(206413-206482)


Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 12694421 - 12694957
Alignment:
Q  17 agtttgtgtgaaacttcaagtttgagattagttgctttgaatcatcgacaagtggtagttcgtgaggaccattgataatgtgttgcttggatagatcttg 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12694421 agtttgtgtgaaacttcaagtttgagattagttactttgaatcatcgacaagtggtagttcgtgaggaccattgataatgtgttgctttgatagatcttg 12694520  T
Q  117 tgttttgtgcaagacttaatggttcaaaaagaactttcattcgtaagaagtgatttatgttgagggaggtgctcgcggagagctaagagattgtatcaaa 216  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12694521 tgttttgtgtaagacttaatggttcaaaaagaactttcattcgtaagaagtgatttatgttgagggacgtgctcgcggagagctaagagattgtatcaaa 12694620  T
Q  217 cttgatagttcgaagagagctaagagattgtatgaaggtgaggccatggcaatgaaagcaccaatttaaggtaccacttttgatggtacctacaagaaag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  12694621 cttgatagttcgaagagagctaagagattgtatgaaggtgaggccatggcaatgaaagcaccaatgtaaggtgccacttttgatggtacctacaagaaag 12694720  T
Q  317 gagaaattactctaaaaggactaaaagctacaattaccctattctaaacaattaatccatggcaatgaaatatatttttattttattatggacctctttt 416  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||| ||  |||||||    
T  12694721 gagaaattactctaaaaggactaaaagctacaattactgtattccaaacaattaatccatggcaatgaaatatatttttattttattacgggtctctttt 12694820  T
Q  417 catttatagagccgagcctctggattcgtaagaacagccctgacccaaagtaatatagaattcggctaagaggggtcaaaatccgactaaggattgttcc 516  Q
    || ||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||    
T  12694821 cacttacagagccgagcctccggattcgtaagaacagctctgacccaacgtaatatagagttcggctaagaggggttaaaatccgactaagaattgttcc 12694920  T
Q  517 cattagatatcgaactttattcctctggatgtttcat 553  Q
    |||||||||||||||||||||||||||||||||||||    
T  12694921 cattagatatcgaactttattcctctggatgtttcat 12694957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 12134019 - 12133967
Alignment:
Q  394 ttattttattatggacctcttttcatttatagagccgagcctctggattcgta 446  Q
    ||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||    
T  12134019 ttattttattacggacctcttttcacttacagaaccgagcctctggattcgta 12133967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 451
Target Start/End: Complemental strand, 28425700 - 28425633
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaac 451  Q
    ||||| ||||||||||||||| ||||||||||||||||| | |  |||||||||| ||||||| ||||    
T  28425700 aaatacatttttattttattacggacctcttttcatttacaaaaacgagcctctgaattcgtaggaac 28425633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 450
Target Start/End: Complemental strand, 11912747 - 11912683
Alignment:
Q  386 atatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaa 450  Q
    |||| |||||||||||||| |||  |||||||| ||||||||||||||||| | ||| |||||||    
T  11912747 atatgtttttattttattacggatatcttttcacttatagagccgagcctccgaatttgtaagaa 11912683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 459
Target Start/End: Complemental strand, 21665694 - 21665619
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctga 459  Q
    ||||| ||||||||||||||| ||  ||||||||| ||| |||||||| ||||  |||||||| ||||| ||||||    
T  21665694 aaatacatttttattttattacgggtctcttttcacttacagagccgaccctccagattcgtaggaacaaccctga 21665619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 44914891 - 44914846
Alignment:
Q  390 atttttattttattatggacctcttttcatttatagagccgagcct 435  Q
    ||||||||||||||| ||||||||||||| ||| ||||| ||||||    
T  44914891 atttttattttattacggacctcttttcacttacagagctgagcct 44914846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 37182760 - 37182812
Alignment:
Q  391 tttttattttattatggacctcttttcatttatagagccgagcctctggattc 443  Q
    |||||||||||||| ||  ||||||||| ||| ||||||||||||| ||||||    
T  37182760 tttttattttattacgggtctcttttcacttacagagccgagcctccggattc 37182812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 45758623 - 45758684
Alignment:
Q  390 atttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaac 451  Q
    ||||||||||||||  ||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  45758623 atttttattttatttcggacctcttttcacttacagagccgagcctctggattcgtaggaac 45758684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 38853645 - 38853699
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctg 438  Q
    ||||| |||||||||||||||||  |||| ||||| ||||||||||||| |||||    
T  38853645 aaatacatttttattttattatgtgcctcatttcacttatagagccgagtctctg 38853699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 448
Target Start/End: Original strand, 35392393 - 35392453
Alignment:
Q  388 atatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaag 448  Q
    |||||||||||||||||||||| | |||||| ||| |||| |||| ||| |||||| ||||    
T  35392393 atatttttattttattatggacattttttcacttacagagtcgagtctccggattcataag 35392453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 359
Target Start/End: Complemental strand, 47896045 - 47896001
Alignment:
Q  316 ggagaaattactctaaaa-ggactaaaagctacaattaccctatt 359  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||    
T  47896045 ggagaaattactctaaaagggactaaaacctacaattacactatt 47896001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 50146424 - 50146480
Alignment:
Q  391 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaa 447  Q
    |||||||||||| ||||  ||| ||||||||| ||||||||||||| | ||||||||    
T  50146424 tttttattttatcatgggtctcgtttcatttacagagccgagcctccgaattcgtaa 50146480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 10407578 - 10407638
Alignment:
Q  391 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaac 451  Q
    |||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||| ||||    
T  10407578 tttttattttattatggacctcttttcacttatagaaccgaacctctagattcgtaggaac 10407638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 459
Target Start/End: Complemental strand, 35080758 - 35080687
Alignment:
Q  388 atatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctga 459  Q
    ||||||||||||||||| || |||||||||| ||| |||| ||||||||| |||||||| |||| |||||||    
T  35080758 atatttttattttattacggccctcttttcacttacagagtcgagcctctagattcgtaggaacggccctga 35080687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 460
Target Start/End: Original strand, 27530610 - 27530680
Alignment:
Q  390 atttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctgac 460  Q
    ||||||||||||||| || |||||||||| ||||||| ||||||||||  ||||||| |||| ||||||||    
T  27530610 atttttattttattacgggcctcttttcacttatagaaccgagcctctaaattcgtaggaacggccctgac 27530680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 452
Target Start/End: Complemental strand, 40794309 - 40794248
Alignment:
Q  391 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaaca 452  Q
    |||||||||||||| |  |||||||||| ||| ||||||||||||| | ||||||| |||||    
T  40794309 tttttattttattacgagcctcttttcacttacagagccgagcctccgaattcgtatgaaca 40794248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 33037898 - 33037954
Alignment:
Q  390 atttttattttattatggacctcttttcatttatagagccgagcctctggattcgta 446  Q
    ||||||||||||||| |  |||||||||  ||| ||||||||||||||| |||||||    
T  33037898 atttttattttattacgagcctcttttcggttacagagccgagcctctgaattcgta 33037954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 251 - 177
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctg 458  Q
    ||||| |||||||||||||||||| ||||| |||| ||  ||||||||||||||||||| | |||||| ||||||    
T  251 aaatacatttttattttattatgggcctctattcacttgcagagccgagcctctggatttgaaagaacggccctg 177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 5893127 - 5893179
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctc 436  Q
    ||||| ||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  5893127 aaatacatttttattttattacggacctcttttcacttacagagccgagcctc 5893179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 456
Target Start/End: Complemental strand, 11906894 - 11906822
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccc 456  Q
    ||||| ||||||||||||||| || |||||||||| ||||| ||||||||||| | ||||||| |||| ||||    
T  11906894 aaatacatttttattttattacgggcctcttttcacttatatagccgagcctccgaattcgtaggaacggccc 11906822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 436
Target Start/End: Complemental strand, 39329384 - 39329332
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctc 436  Q
    |||||| |||||||||||||| ||||||||||||| ||| ||| |||||||||    
T  39329384 aaatatgtttttattttattacggacctcttttcacttacagaaccgagcctc 39329332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 458
Target Start/End: Original strand, 24614077 - 24614143
Alignment:
Q  392 ttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctg 458  Q
    ||||||||||||| || |||||||||| ||| ||||| || ||||  ||||||||||||| ||||||    
T  24614077 ttttattttattacgggcctcttttcacttacagagctgaacctccagattcgtaagaacggccctg 24614143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 451
Target Start/End: Complemental strand, 26917715 - 26917656
Alignment:
Q  392 ttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaac 451  Q
    ||||||||||||| ||||||||||||| ||| |||| | ||||||| |||||||||||||    
T  26917715 ttttattttattacggacctcttttcacttacagagtcaagcctctagattcgtaagaac 26917656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 6765669 - 6765598
Alignment:
Q  391 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctgaccc 462  Q
    |||||||||||||| |  ||||||||||| || ||| | ||||||| ||||||||| ||||| |||||||||    
T  6765669 tttttattttattacgagcctcttttcatctacagaactgagcctccggattcgtaggaacaaccctgaccc 6765598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 18201246 - 18201319
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctg 458  Q
    ||||||||||||||||||||| |||| || ||||| ||  ||||||||||||| ||||||||  |||| ||||||    
T  18201246 aaatatatttttattttattacggacatc-tttcacttgcagagccgagcctccggattcgtgggaacggccctg 18201319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 23744906 - 23744980
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctg 458  Q
    ||||| ||||||||||| ||| || |||||||||| ||||||||| |||||||   ||||||| |||| ||||||    
T  23744906 aaatacatttttatttttttacgggcctcttttcacttatagagctgagcctccaaattcgtaggaacggccctg 23744980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 459
Target Start/End: Complemental strand, 12419477 - 12419412
Alignment:
Q  394 ttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctga 459  Q
    ||||||||||| || |||||||||| ||| | ||||||||||| |||||| || |||| |||||||    
T  12419477 ttattttattacgggcctcttttcacttacaaagccgagcctccggattcataggaacggccctga 12419412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 457
Target Start/End: Complemental strand, 23020476 - 23020404
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccct 457  Q
    ||||| ||||||||||||||| ||||||||||||| ||| ||| ||| |||||  |||||||| |||| |||||    
T  23020476 aaatacatttttattttattacggacctcttttcacttacagaaccg-gcctccagattcgtaggaacggccct 23020404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 9014163 - 9014119
Alignment:
Q  392 ttttattttattatggacctcttttcatttatagagccgagcctc 436  Q
    ||||||||||||| || |||||||||| |||||||| ||||||||    
T  9014163 ttttattttattacgggcctcttttcacttatagagtcgagcctc 9014119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 447
Target Start/End: Complemental strand, 5973099 - 5973037
Alignment:
Q  385 aatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaa 447  Q
    |||| |||||||||||||||  |||||||||||||||| |||||| |||||| ||| ||||||    
T  5973099 aatacatttttattttattacagacctcttttcatttacagagccaagcctccggaatcgtaa 5973037  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 34789855 - 34789806
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagc 433  Q
    ||||| ||||||||||||||| |||||| |||||| ||||||||||||||    
T  34789855 aaatacatttttattttattacggaccttttttcacttatagagccgagc 34789806  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 4097815 - 4097882
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaac 451  Q
    |||| |||||||||||||||| ||| ||||||| ||||| ||||| ||  |||||||||| |||||||    
T  4097815 aaatgtatttttattttattacggatctctttttatttacagagctgaatctctggattcataagaac 4097882  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 458
Target Start/End: Complemental strand, 38009137 - 38009070
Alignment:
Q  391 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctg 458  Q
    |||||||||||||| |||| |||||||| ||| ||| ||||||||| |||||| || |||| ||||||    
T  38009137 tttttattttattacggacttcttttcagttacagaaccgagcctccggattcataggaacggccctg 38009070  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 457
Target Start/End: Complemental strand, 7944515 - 7944442
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccct 457  Q
    ||||| ||||||||||||||| ||||||||||||| ||| |||  ||||| ||  |||||||| |||| |||||    
T  7944515 aaatacatttttattttattacggacctcttttcaattacagaatcgagcttcctgattcgtaggaacggccct 7944442  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 8103024 - 8103069
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagcc 429  Q
    ||||| |||||||||||||||| | |||||||||||||| ||||||    
T  8103024 aaatacatttttattttattataggcctcttttcatttacagagcc 8103069  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 27131185 - 27131131
Alignment:
Q  391 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgt 445  Q
    ||||||||||||||  || ||||||||||||||||||  ||||||||||||||||    
T  27131185 tttttattttattacagatctcttttcatttatagagttgagcctctggattcgt 27131131  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 391 - 468
Target Start/End: Original strand, 20611908 - 20611985
Alignment:
Q  391 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctgacccaaagta 468  Q
    |||||||||| |||||| |||||||||| ||| ||||||||||||| | ||||||| ||||  |||||| || |||||    
T  20611908 tttttatttttttatgggcctcttttcacttacagagccgagcctccgaattcgtaggaacgaccctgatcccaagta 20611985  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 460
Target Start/End: Complemental strand, 36179548 - 36179474
Alignment:
Q  386 atatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctgac 460  Q
    ||||||||||||||||||| || |||||||||| |||| |  || |||||| ||||||||| |||| ||||||||    
T  36179548 atatatttttattttattacgggcctcttttcacttatgggaccaagcctccggattcgtaggaacggccctgac 36179474  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 455
Target Start/End: Complemental strand, 206482 - 206413
Alignment:
Q  384 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagcc 455  Q
    ||||| |||||||||||||||   ||||||||||| ||| ||||||  ||||| ||||||||| ||||||||    
T  206482 aaatacatttttattttattacaaacctcttttcacttacagagcc--gcctcaggattcgtaggaacagcc 206413  T

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