View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19988_low_4 (Length: 510)

Name: NF19988_low_4
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19988_low_4
NF19988_low_4
[»] chr4 (8 HSPs)
chr4 (1-498)||(35098158-35098658)
chr4 (1-166)||(35097869-35098034)
chr4 (1-136)||(35072678-35072813)
chr4 (1-138)||(36296449-36296586)
chr4 (1-137)||(35107047-35107183)
chr4 (17-132)||(36935859-36935975)
chr4 (9-131)||(36940478-36940600)
chr4 (9-55)||(36953720-36953766)
[»] chr6 (2 HSPs)
chr6 (1-136)||(24014177-24014312)
chr6 (1-137)||(24040733-24040869)
[»] chr5 (1 HSPs)
chr5 (1-130)||(34919145-34919274)


Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 35098158 - 35098658
Alignment:
Q  1 ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098158 ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa 35098257  T
Q  101 gcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgttattatgttgcttaaaaattatttgcgtccttgagagtgttggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  35098258 gcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgttattatgttgcttaaaaattattcgcgtccttcagagtgttggt 35098357  T
Q  201 tgtaatgcttaccttttgtgtgtgatgtgggt----gtgagttatcatgtcatatgtgaaatgttgctgaataaataaaattattaattctccaattttt 296  Q
    ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35098358 tgtaatgcttaccttttgtgtgtgatgtgggtgtgagtgagttatcatgtcatatgtgaaatgttgctgaataaat-aaattattaattctccaattttt 35098456  T
Q  297 ccttcaagttcactggagtattgattcttttgcaatccttcataatttcccttgtgtatttcatttggcatattaagactcatttgttatcttgcctaac 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098457 ccttcaagttcactggagtattgattcttttgcaatccttcataatttcccttgtgtatttcatttggcatattaagactcatttgttatcttgcctaac 35098556  T
Q  397 ttccattcctagacaacgtggtcatcacactgagctctatgatctcaaatgcttggagcagtaaatcatgaataatgctaggattctgattgatcttatt 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098557 ttccattcctagacaacgtggtcatcacactgagctctatgatctcagatgcttggagcagtaaatcatgaataatgctaggattctgattgatcttatt 35098656  T
Q  497 tt 498  Q
    ||    
T  35098657 tt 35098658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 35097869 - 35098034
Alignment:
Q  1 ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35097869 ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa 35097968  T
Q  101 gcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgttattatgttg 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35097969 gcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgttattatgttg 35098034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 35072813 - 35072678
Alignment:
Q  1 ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa 100  Q
    ||||||| ||||  || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||    
T  35072813 ggaggtttagataaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaa 35072714  T
Q  101 gcctgatgttaagtccattgaaatctctggttgaac 136  Q
     ||||||||||||||||| |||||||||||||||||    
T  35072713 acctgatgttaagtccatcgaaatctctggttgaac 35072678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 36296586 - 36296449
Alignment:
Q  1 ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa 100  Q
    |||||||||||||||| || ||||| || ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||||    
T  36296586 ggaggttcagattgcccgaaaatgccaagatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgttccaaaagaagaagttaagaa 36296487  T
Q  101 gcctgatgttaagtccattgaaatctctggttgaactt 138  Q
     |||||||||||||| ||||| ||||||||||||||||    
T  36296486 acctgatgttaagtctattgagatctctggttgaactt 36296449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 35107047 - 35107183
Alignment:
Q  1 ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa 100  Q
    ||||||| ||||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||| || || ||||||||||||||    
T  35107047 ggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgctatggagaatggtgttctcgctgtcactgtccctaaggaagagatcaagaa 35107146  T
Q  101 gcctgatgttaagtccattgaaatctctggttgaact 137  Q
    |||||| || ||  |||||||||||||||||| ||||    
T  35107147 gcctgaagtcaaagccattgaaatctctggttaaact 35107183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 36935975 - 36935859
Alignment:
Q  17 tgagaatgcgaaaatggaccaagtgaaagctgcaat-ggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtc 115  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||| | ||||||||||| || ||| |    
T  36935975 tgagaatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgttaccgtgccacaagaagaggttaagaagcctgaagtgaagac 36935876  T
Q  116 cattgaaatctctggtt 132  Q
    |||||| ||||||||||    
T  36935875 cattgatatctctggtt 36935859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 36940600 - 36940478
Alignment:
Q  9 agattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatg 108  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||  |||||||||| ||||| || ||| ||||||||||||| | ||| |    
T  36940600 agattgcctgagaatgctaaaatggatcaaatgaaagctgcaatggagaatggcattctcactgtcactgtgcctaaaaaagagatcaagaatcatgaag 36940501  T
Q  109 ttaagtccattgaaatctctggt 131  Q
    ||||  ||||||| |||||||||    
T  36940500 ttaaaaccattgatatctctggt 36940478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 36953766 - 36953720
Alignment:
Q  9 agattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatgga 55  Q
    ||||||||||| ||||| |||| ||| ||||||||||||||||||||    
T  36953766 agattgcctgacaatgctaaaacggatcaagtgaaagctgcaatgga 36953720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 24014312 - 24014177
Alignment:
Q  1 ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa 100  Q
    |||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||    
T  24014312 ggagattcaggttgcccgaaaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaa 24014213  T
Q  101 gcctgatgttaagtccattgaaatctctggttgaac 136  Q
     ||||||||||||||||| |||||||||||||||||    
T  24014212 acctgatgttaagtccatcgaaatctctggttgaac 24014177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 24040869 - 24040733
Alignment:
Q  1 ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa 100  Q
    ||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| || || |||||  | |||||    
T  24040869 ggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtattctcactgtcactgtccctaaggaagaagttaagaa 24040770  T
Q  101 gcctgatgttaagtccattgaaatctctggttgaact 137  Q
    |||| | || ||| ||||||| |||||||||| ||||    
T  24040769 gcctcaagtgaagaccattgatatctctggttaaact 24040733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 34919145 - 34919274
Alignment:
Q  1 ggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa 100  Q
    ||||||| || |||||||||||||  |||||||| || || |||||||  ||||||||||| ||||| |||||||||||||| || |||||    |||||    
T  34919145 ggaggtttaggttgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaagaagagaagaa 34919244  T
Q  101 gcctgatgttaagtccattgaaatctctgg 130  Q
    |  ||| |||||||| |||||||| |||||    
T  34919245 gagtgaggttaagtctattgaaatttctgg 34919274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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