View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19988_low_6 (Length: 347)
Name: NF19988_low_6
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19988_low_6 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 12533270 - 12533599
Alignment:
| Q |
1 |
agtagctgtctttagtatatcaaggatttttgcaataatggtaagtgcattgagcaaaaaacatcagcatttactacttctgttctatagggcaccattc |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12533270 |
agtagctgtctttactatatcaaggatttttgcaataatgataagtgcattgagcaaaaaacatcatcatttactacttctgttctatagggcaccattc |
12533369 |
T |
|
| Q |
101 |
atgggtgcatatctgcttaaactatttgtttaattcagtttgcagcttatctgcaacaactttacaaaatggctcatattaatctatgatgcataaaaat |
200 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12533370 |
atgggtgcacatctgcttaaactccttgtttaattcagtttgcagcttgtctgcaacaactttacaaaatggctcatattaatctatgatgcataaaaat |
12533469 |
T |
|
| Q |
201 |
gaatggtcctgtttgttaatgcagttcacttctgaaagcatcttgtgttaagccttaaccct--aaaacttgctggtagattttagaaggtaataaggat |
298 |
Q |
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|||||||| |||| ||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12533470 |
gaatggtcatgttcgttaatgcaattaacttctgaaagcatcttgtgctaagccttaaccctaaaaaacttgctggtagattttagaaggtaataaggat |
12533569 |
T |
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| Q |
299 |
tttcagagtaattggattaatgggaggggt |
328 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12533570 |
tttcagagtaattggattaatgggaggggt |
12533599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 12534258 - 12534587
Alignment:
| Q |
1 |
agtagctgtctttagtatatcaaggatttttgcaataatggtaagtgcattgagcaaaaaacatcagcatttactacttctgttctatagggcaccattc |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12534258 |
agtagctgtctttaatatatcaaggatttttgcaataatgataagtgcattgagcaaaaaacatcatcatttactacttctgttctatagggcaccattc |
12534357 |
T |
|
| Q |
101 |
atgggtgcatatctgcttaaactatttgtttaattcagtttgcagcttatctgcaacaactttacaaaatggctcatattaatctatgatgcataaaaat |
200 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12534358 |
atgggtgcacatctgcttaaactccttgtttaattcagtttgcagcttgtctgcaacaactttacaaaatggctcatattaatctatgatgcataaaaat |
12534457 |
T |
|
| Q |
201 |
gaatggtcctgtttgttaatgcagttcacttctgaaagcatcttgtgttaagccttaaccct--aaaacttgctggtagattttagaaggtaataaggat |
298 |
Q |
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|||||||| |||| ||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12534458 |
gaatggtcatgttcgttaatgcaattaacttctgaaagcatcttgtgctaagccttaaccctaaaaaacttgctggtagattttagaaggtaataaggat |
12534557 |
T |
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| Q |
299 |
tttcagagtaattggattaatgggaggggt |
328 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12534558 |
tttcagagtaattggattaatgggaggggt |
12534587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 30195 - 29868
Alignment:
| Q |
1 |
agtagctgtctttagtatatcaaggatttttgcaataatggtaagtgcattgagcaaaaaacatcagcatttactacttctgttctatagggcaccattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30195 |
agtagctgtctttagtatatcaaggatttttgcaataatgataagtgcattgagcaaaaaacat--gcatttactacttctgttctatagggcaccattc |
30098 |
T |
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| Q |
101 |
atgggtgcatatctgcttaaactatttgtttaattcagtttgcagcttatctgcaacaactttacaaaatggctcatattaatctatgatgcataaaaat |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30097 |
atgggtgcatatctgcttaaactccttgtttaattcagtttgcagcttgcctgcaacaactttacaaaatggcttatattaatctatgatgcataaaaat |
29998 |
T |
|
| Q |
201 |
gaatggtcctgtttgttaatgcagttcacttctgaaagcatcttgtgttaagccttaaccct--aaaacttgctggtagattttagaaggtaataaggat |
298 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
29997 |
gaatggtcctgttcgttaatgcagttcacttctgaaagcatcttgtgttaaaccttatccctaaaaaacttgctggtagattttagaaggtaataaggat |
29898 |
T |
|
| Q |
299 |
tttcagagtaattggattaatgggaggggt |
328 |
Q |
| |
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||||||| |||||||||||||||||||||| |
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| T |
29897 |
tttcagaataattggattaatgggaggggt |
29868 |
T |
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