View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19988_low_8 (Length: 329)
Name: NF19988_low_8
Description: NF19988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19988_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 141 - 318
Target Start/End: Complemental strand, 248281 - 248104
Alignment:
| Q |
141 |
gaaatacctagctagctagaagatgtgtaaaaaatacgacccttttataagttgcatttatcattttaacgtatattttgaaatgtaatagtgtagttaa |
240 |
Q |
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| T |
248281 |
gaaatacctagctagctagaagatgtgtaaaaaatacgacccttttataagttgcatttatcattttaacgtatattttgaaatgtaatagtgtagttaa |
248182 |
T |
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| Q |
241 |
tgtgtttattttatatatgagtgttagtaaagcaccattttgtttatggattatagatatgtccgattttaatttctt |
318 |
Q |
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| T |
248181 |
tgtgtttattttatatatgagtgttagtaaagcaccattttgtttatggattatagatatgtccgattttaatttctt |
248104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 248412 - 248333
Alignment:
| Q |
18 |
aaggggaccccacaacttggattcctcttgtgtgttctctc--tctcgtccatcacctcctaaaccaaaatcctttcttc |
95 |
Q |
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| T |
248412 |
aaggggaccccacaacttggattcctcttgtgtgttctctctctctcgtccatcacctcctaaaccaaaatcctttcttc |
248333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 53656054 - 53656022
Alignment:
| Q |
228 |
atagtgtagttaatgtgtttattttatatatga |
260 |
Q |
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| T |
53656054 |
atagtgtagttaatgtgtttattttatgtatga |
53656022 |
T |
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