View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19989_high_3 (Length: 316)
Name: NF19989_high_3
Description: NF19989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19989_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 6871251 - 6871538
Alignment:
| Q |
19 |
caaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcattcnnnnnnntaaaataaatttggcatgccgttaattaaatgtg |
118 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6871251 |
caaacctgaacgaataagtatatactaatctaataactaactactaacatttgtcatttaaaaaaataaaataaatttggcatgccgttaattaaatgtg |
6871350 |
T |
|
| Q |
119 |
cagcagtgaaaaccacatcaccccataattaattgttaggctttgattttgagaaactcagaattttattttaaagatatatgtattacaattgaaaatt |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6871351 |
cagtagtgaaaaccacatcaccccataattaattgttaggctttgattttgagaaactcagaattttattttaaagatatatgtattacaattgaaaatt |
6871450 |
T |
|
| Q |
219 |
catttaattttggttttgtgaataatgaaaaaacttcgtaaattttatagtggctgatgttagttttccctttttacacaggtctgtg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6871451 |
catttaattttggttttgtgaataatgaaaaaacttcgtaaattttatagtggctgatgttagttttccctttttacacaggtctgtg |
6871538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 14239275 - 14239217
Alignment:
| Q |
20 |
aaacctggacgaataagtaaa-tactaatctaataactaactactaacatttgtcattc |
77 |
Q |
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| T |
14239275 |
aaacctggacgaatgagtaaaatattaatctaataactaacttctaccatttgtcattc |
14239217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 13380482 - 13380524
Alignment:
| Q |
35 |
agtaaatactaatctaataactaactactaacatttgtcattc |
77 |
Q |
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| T |
13380482 |
agtaaatattaatctaacaactaactactagcatttgtcattc |
13380524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 14988507 - 14988548
Alignment:
| Q |
36 |
gtaaatactaatctaataactaactactaacatttgtcattc |
77 |
Q |
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| T |
14988507 |
gtaaatattaatctaataaccaactactaacatttgacattc |
14988548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 48308135 - 48308090
Alignment:
| Q |
31 |
aataagtaaatactaatctaataactaactactaacatttgtcatt |
76 |
Q |
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||||| |||||| |||||||| |||||||||||||||||||||||| |
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| T |
48308135 |
aataattaaatattaatctaacaactaactactaacatttgtcatt |
48308090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 54913706 - 54913673
Alignment:
| Q |
38 |
aaatactaatctaataactaactactaacatttg |
71 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
54913706 |
aaatactaatctaacaactaactactaacatttg |
54913673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 37829976 - 37830034
Alignment:
| Q |
19 |
caaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcattc |
77 |
Q |
| |
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|||||| ||||||| |||| ||| |||||||| |||||| |||||||||||||||||| |
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| T |
37829976 |
caaacccggacgaaggagtagatattaatctaacaactaattactaacatttgtcattc |
37830034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 2477263 - 2477319
Alignment:
| Q |
20 |
aaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcatt |
76 |
Q |
| |
|
||||| ||| ||| ||||||||| |||||||| || ||| ||||||||||||||||| |
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| T |
2477263 |
aaaccaggatgaaaaagtaaatattaatctaacaattaattactaacatttgtcatt |
2477319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 27112459 - 27112403
Alignment:
| Q |
20 |
aaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcatt |
76 |
Q |
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||||| ||| ||| ||||||||| |||||||| || ||| ||||||||||||||||| |
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| T |
27112459 |
aaaccaggatgaaaaagtaaatattaatctaacaattaattactaacatttgtcatt |
27112403 |
T |
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