View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19989_low_2 (Length: 543)

Name: NF19989_low_2
Description: NF19989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19989_low_2
NF19989_low_2
[»] chr4 (3 HSPs)
chr4 (1-339)||(38539036-38539366)
chr4 (374-473)||(31911573-31911672)
chr4 (340-388)||(50656957-50657005)
[»] scaffold0425 (2 HSPs)
scaffold0425 (347-533)||(4398-4576)
scaffold0425 (340-396)||(3826-3882)
[»] chr7 (3 HSPs)
chr7 (340-525)||(325520-325697)
chr7 (371-473)||(34853249-34853351)
chr7 (341-396)||(325329-325384)
[»] chr2 (2 HSPs)
chr2 (421-533)||(6852535-6852647)
chr2 (340-388)||(35214584-35214632)
[»] chr3 (1 HSPs)
chr3 (340-388)||(42423227-42423275)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 38539366 - 38539036
Alignment:
Q  1 tagctgtccacatgaatcgattcatagttttttgctgcctactctccttggcatagctaggaacagtcactattgatctatactaatgaaattaaaggga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38539366 tagctctccacatgaatcgattcatagttttttgctgcctaatctccttggcatagctaggaacagtcactattgatctatactaatgaaattaaaggga 38539267  T
Q  101 atcacacaatctagagnnnnnnncttagtggaattttgttttggaaaacacacaaacaaaaaagttcctagcaagttagattacataaaatctatataat 200  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38539266 atcacacaatctagagtttttttcttagtggaattttgttttggaaaacacacaaacaaaaaagttcctagcaagttagattacataaaatctatataat 38539167  T
Q  201 atgttatgtcaatttttgagacctgaaaaaccaatcaccattcgacaactaagacaatatgatgatcaataacgggccttgttgtttaggaatactgcag 300  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  38539166 atgttatgtcaatttttgagacctgaaaaaccaatcatcattcgacaactaagacaatatgatgatcaataacgggccttgttgtttaggaatactg--- 38539070  T
Q  301 gaagccaggaacaacagaaaggtacaaggcatactatac 339  Q
          |||||||||||||||||||||||||||||||||    
T  38539069 -----taggaacaacagaaaggtacaaggcatactatac 38539036  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 473
Target Start/End: Original strand, 31911573 - 31911672
Alignment:
Q  374 ccaccatgggaaagtcactttttaccgccacctgtgagtgaaacaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcactatctaata 473  Q
    ||||||||| |||||  ||||||||  |||| ||| |||||||| ||||| | || |||||||||||||||||||||||||||||||||| ||| |||||    
T  31911573 ccaccatggaaaagttgctttttactaccacttgtaagtgaaaccggtttcactatttttgtttgttttttcaaaaggaaaaagaatgcagtatttaata 31911672  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 50656957 - 50657005
Alignment:
Q  340 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagt 388  Q
    ||||| |||||||||  ||||||||| |||||||||||||||| |||||    
T  50656957 ggtggtatttcacatgagacacttgaaaatcttcccaccatggaaaagt 50657005  T

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Target: scaffold0425 (Bit Score: 150; Significance: 5e-79; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 347 - 533
Target Start/End: Complemental strand, 4576 - 4398
Alignment:
Q  347 tttcacataggacacttgataatcttcccaccatgggaaagtcactttttaccgccacctgtgagtgaaacaggttttattaattttgtttgttttttca 446  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  4576 tttcacataggacacttgataatcttcccaccatgagaaagtcactttttaccgccacctc--------acaggttttattaattttgtttgttttttca 4485  T
Q  447 aaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttgatcattcatc 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4484 aaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttgatcattcatc 4398  T

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Target: scaffold0425; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 3826 - 3882
Alignment:
Q  340 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagtcacttttt 396  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  3826 ggtggcatttcacatgggacacttgaaaatcttcccaccatgggaaagtcacatttt 3882  T

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Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 340 - 525
Target Start/End: Complemental strand, 325697 - 325520
Alignment:
Q  340 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagtcactttttaccgccacctgtgagtgaaacaggttttattaattttgtttgt 439  Q
    |||||||||| |||| ||||| |||| || ||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||     
T  325697 ggtggcatttaacatgggacatttgaaaaccttcccaccatgggaaaatcactttttaccgccacctgtgag--------gttttattaattttgtttgg 325606  T
Q  440 tttttcaaaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttgat 525  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  325605 tttttcaaaaggaaaaagaatgcaatatctaataatcgtaatatatttcttttgattaatatcatttccttcttctctcttttgat 325520  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 371 - 473
Target Start/End: Complemental strand, 34853351 - 34853249
Alignment:
Q  371 ttcccaccatgggaaagtcactttttaccgccacctgtgagtgaaacaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcactatcta 470  Q
    |||||||||| |||||||  |||||||| ||||| ||| |||||||| ||||| | || ||||||||||||||||||||| |||||||||||| ||| ||    
T  34853351 ttcccaccataggaaagttgctttttactgccacttgtaagtgaaaccggtttcactatttttgtttgttttttcaaaagaaaaaagaatgcagtattta 34853252  T
Q  471 ata 473  Q
    |||    
T  34853251 ata 34853249  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 396
Target Start/End: Original strand, 325329 - 325384
Alignment:
Q  341 gtggcatttcacataggacacttgataatcttcccaccatgggaaagtcacttttt 396  Q
    ||||||||| |||| |||||||||| |||||||||||||| | |||||||| ||||    
T  325329 gtggcatttaacatgggacacttgaaaatcttcccaccatagaaaagtcacatttt 325384  T

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Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 421 - 533
Target Start/End: Complemental strand, 6852647 - 6852535
Alignment:
Q  421 ttttattaattttgtttgttttttcaaaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctctt 520  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6852647 ttttattaattttgtttgttttttcaaaagggaaaagaatgcaatatctaataatcttaatatatttcttttgattaatatcatttccttcttctctctt 6852548  T
Q  521 ttgatcattcatc 533  Q
    |||||||||||||    
T  6852547 ttgatcattcatc 6852535  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 35214584 - 35214632
Alignment:
Q  340 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagt 388  Q
    |||| ||||| ||||  ||||||||| ||||||||||||||||||||||    
T  35214584 ggtgacatttaacatgagacacttgaaaatcttcccaccatgggaaagt 35214632  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 42423275 - 42423227
Alignment:
Q  340 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagt 388  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  42423275 ggtggcatttcacatgagacacttgaaaatcttcccaccatgggaaagt 42423227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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