View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19989_low_6 (Length: 261)
Name: NF19989_low_6
Description: NF19989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19989_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 27889741 - 27889981
Alignment:
| Q |
13 |
caaattctccattgagattatcactctctaatattaagccatcaagactcatattaagatcttctatactgttctttttatccttaatttcttccttcaa |
112 |
Q |
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| T |
27889741 |
caaattctccattgagattatcactctctaatattaagccatcaagactcatattaagatcttctatactgttttttttatccttaatttcttccttcaa |
27889840 |
T |
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| Q |
113 |
tatctcaatttcatctttgaatgtctcttccatttgagtctgttgttcaaacaatttacatacttccgtctttaactgtgctttttcgaagaagcttttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27889841 |
tatctcaatttcatctttgaatgtctcttccatttgagtctgttgttcaaacaatttacatacttccgtctttaaccgtgctttttcgaagaagcttttt |
27889940 |
T |
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| Q |
213 |
tgttctgtatcggataaaacagattttaaatccttcatctc |
253 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27889941 |
tgttctgtatcggataaaacagattttaaatccttgatctc |
27889981 |
T |
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