View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1998_high_1 (Length: 460)
Name: NF1998_high_1
Description: NF1998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1998_high_1 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 202 - 443
Target Start/End: Complemental strand, 39408319 - 39408081
Alignment:
| Q |
202 |
gtatatttgtttgaatttattctttttaatattttgtctaaatctacttgtgctgtgcatttgcctcnnnnnnnnnnnnnnnnagaggaacctaaccaaa |
301 |
Q |
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| T |
39408319 |
gtatatttgtttgaatgtattctttttaatattttgtctaaatctacttgtgctgtgcatttgcctcttttttgttttgttttagaggaacctaaccaaa |
39408220 |
T |
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| Q |
302 |
aattcagacattagaaaatcgaaaattcaaagagctacatctaacatatcaaatcaaatagtatataatgtgatccaattaatttatgttcaccaaatga |
401 |
Q |
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| T |
39408219 |
aattcagacattagaaaatcgaaaattcaaagagctacatctaacatatcaaatcaaata-tatataatgtgatccaattattttatgttcaccaaatga |
39408121 |
T |
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| Q |
402 |
aacgcaaacgcgttttaagagagagtcaagtgaccatgacca |
443 |
Q |
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| T |
39408120 |
aacgcaaacgcgtttta--agagagtcaagtgaccatgacca |
39408081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 39408419 - 39408352
Alignment:
| Q |
102 |
gtgagagcctatcctaaacatttaatttcaacctctggttctttgatgaatggtcacgactccatttg |
169 |
Q |
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| T |
39408419 |
gtgagagcctatcctaaacatttaatttcaacctctggttctttgatgaatggccacgactccatttg |
39408352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 31392 - 31459
Alignment:
| Q |
102 |
gtgagagcctatcctaaacatttaatttcaacctctggttctttgatgaatggtcacgactccatttg |
169 |
Q |
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| T |
31392 |
gtgagagcctatcctaaacatttaatttcaacctctggttctttgatgaatggccacgactccatttg |
31459 |
T |
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