View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1998_high_6 (Length: 280)
Name: NF1998_high_6
Description: NF1998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1998_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 26 - 267
Target Start/End: Original strand, 40375539 - 40375780
Alignment:
| Q |
26 |
tctgcacaaagtcagatatttagttcacagagacataaagcctgctaatttacttgtaaatctcaaaggggagccgaaaattactgattttggtattact |
125 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
40375539 |
tctgcacggagtcagatatttagttcacagagacataaagcctgctaatttacttgtaaatctcaaaggggagacggaaattactgattttggtattact |
40375638 |
T |
|
| Q |
126 |
tctttcttagagaattcagttgtaatggttagtatatactctatcagtcacagtttgttgttgtcatgctttgcttccacataacgatttgcttctacac |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| |
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| T |
40375639 |
tctttcttagagaattcagttgtaatggttagtatatactctatcagtcacagtttgttgttgtcgtgctttgcttccacatactgatttgcttccacac |
40375738 |
T |
|
| Q |
226 |
tttgtttgcttgactgttaatgtgtaagtttatatgaaaatt |
267 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40375739 |
tttgtttgcttgactgttaatgtgtatgtttatatgaaaatt |
40375780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 653715 - 653538
Alignment:
| Q |
26 |
tctgcacaaagtcagatatttagttcacagagacataaagcctgctaatttacttgtaaatctcaaaggggagccgaaaattactgattttggtattact |
125 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| | |
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| T |
653715 |
tctgcacggagtcagatatttagttcacagagacataaagcctgctaatttacttgtaaatctcaagggggagccaaaaattaccgattttggtattagt |
653616 |
T |
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| Q |
126 |
tctttcttagagaattcagttgtaatggttagtatatactctatcagtcacagtttgttgttgtcatgctttgcttcc |
203 |
Q |
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|| ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |
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| T |
653615 |
gctggcttagagaattcagttgcaatggttagtatatactcaatcagtaacagtttgttgttgtcacgctttgcttcc |
653538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 9470427 - 9470572
Alignment:
| Q |
26 |
tctgcacaaagtcagatatttagttcacagagacataaagcctgctaatttacttgtaaatctcaaaggggagccgaaaattactgattttggtattact |
125 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |
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| T |
9470427 |
tctgcacgcagtcagatatttagttcacagagacataaagcctgctaatttacttgtaaatctcaaaggggagccgaaaattattgattttgttattagt |
9470526 |
T |
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| Q |
126 |
tctttcttagagaattcagttgtaatggttagtatatactctatca |
171 |
Q |
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| |||||| |||||||||| ||||||||||||||||||||||| |
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| T |
9470527 |
gttggcttagaaaattcagttgcaatggttagtatatactctatca |
9470572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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