View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1998_high_7 (Length: 237)

Name: NF1998_high_7
Description: NF1998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1998_high_7
NF1998_high_7
[»] chr8 (3 HSPs)
chr8 (1-125)||(39312242-39312366)
chr8 (123-203)||(39313535-39313615)
chr8 (5-60)||(44042504-44042559)
[»] chr7 (2 HSPs)
chr7 (5-60)||(6388037-6388092)
chr7 (17-61)||(15034894-15034938)
[»] chr2 (5 HSPs)
chr2 (4-55)||(15120130-15120181)
chr2 (17-57)||(12133502-12133542)
chr2 (4-37)||(29260410-29260443)
chr2 (12-64)||(32493163-32493215)
chr2 (17-61)||(43745590-43745634)
[»] chr6 (2 HSPs)
chr6 (5-61)||(10571026-10571082)
chr6 (5-60)||(29407970-29408025)
[»] chr1 (3 HSPs)
chr1 (4-59)||(45925460-45925515)
chr1 (9-61)||(13792085-13792137)
chr1 (5-61)||(43492213-43492269)
[»] chr5 (2 HSPs)
chr5 (4-62)||(19113712-19113770)
chr5 (5-62)||(248546-248603)
[»] chr3 (1 HSPs)
chr3 (5-71)||(7278249-7278315)
[»] chr4 (2 HSPs)
chr4 (10-59)||(14452221-14452270)
chr4 (5-57)||(17126770-17126821)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 39312242 - 39312366
Alignment:
Q  1 tctttttcttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaagacccttattaaaattgtcatagtttgaggacatggagaaacaaat 100  Q
    |||||||| ||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39312242 tctttttcctaattaagaatccttaaagagtgccctatgggcacttgttagcaagacccttattaaaattgtcatagtttgaggacatggagaaacaaat 39312341  T
Q  101 agttgcatgaggaaggatttagcca 125  Q
    |||||||||||||||||||||||||    
T  39312342 agttgcatgaggaaggatttagcca 39312366  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 39313535 - 39313615
Alignment:
Q  123 ccaccgtgttgatgcattaacaagcaatgatgaattaagattcagatgccaagtatttcaattaaagtagcataaatacca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39313535 ccaccgtgttgatgcattaacaagcaatgatgaattaagattcagatgccaagtatttcaattaaagtagcataaatacca 39313615  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 44042559 - 44042504
Alignment:
Q  5 tttcttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaagaccct 60  Q
    ||||||||||| |||||||||||||||||||| | |||||| |||| ||| |||||    
T  44042559 tttcttaattatgaatccttaaagagtgtccttagggcactcgttaacaaaaccct 44042504  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 6388037 - 6388092
Alignment:
Q  5 tttcttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaagaccct 60  Q
    |||||| |||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  6388037 tttctttattatgaatccttaaagagtgtcttaaaggcacttgttaacaagaccct 6388092  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 15034894 - 15034938
Alignment:
Q  17 gaatccttaaagagtgtcctaaaggcacttgttagcaagaccctt 61  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||    
T  15034894 gaatccttaaagagtgtcctaagggcactcgttaacaagaccctt 15034938  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 15120130 - 15120181
Alignment:
Q  4 ttttcttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaag 55  Q
    |||||||||||| |||||||||||||||| ||||| |||||| |||||||||    
T  15120130 ttttcttaattaggaatccttaaagagtgccctaagggcactcgttagcaag 15120181  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 12133542 - 12133502
Alignment:
Q  17 gaatccttaaagagtgtcctaaaggcacttgttagcaagac 57  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  12133542 gaatccttaaagagtgtcctaagggcacttgttaacaagac 12133502  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 29260410 - 29260443
Alignment:
Q  4 ttttcttaattaagaatccttaaagagtgtccta 37  Q
    |||||||||||||||||||||||||||| |||||    
T  29260410 ttttcttaattaagaatccttaaagagtatccta 29260443  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 32493163 - 32493215
Alignment:
Q  12 attaagaatccttaaagagtgtcctaaaggcacttgttagcaagacccttatt 64  Q
    ||||||||||||||||||||||||| | | || | |||| |||||||||||||    
T  32493163 attaagaatccttaaagagtgtccttatgacagtcgttaacaagacccttatt 32493215  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 43745634 - 43745590
Alignment:
Q  17 gaatccttaaagagtgtcctaaaggcacttgttagcaagaccctt 61  Q
    |||||||||||||||| ||||| |||||| |||| ||||||||||    
T  43745634 gaatccttaaagagtgccctaagggcactcgttaacaagaccctt 43745590  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 10571026 - 10571082
Alignment:
Q  5 tttcttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaagaccctt 61  Q
    |||||||||||||||||||||||||||||||| | |  ||| ||||| |||||||||    
T  10571026 tttcttaattaagaatccttaaagagtgtccttatgaaactcgttagtaagaccctt 10571082  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 29408025 - 29407970
Alignment:
Q  5 tttcttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaagaccct 60  Q
    |||||| |||| |||||||||||||||| ||| |||||||| |||| |||||||||    
T  29408025 tttctttattaggaatccttaaagagtgcccttaaggcactcgttaacaagaccct 29407970  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 45925515 - 45925460
Alignment:
Q  4 ttttcttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaagaccc 59  Q
    ||||||| ||||||||||||||||||||||||| | | |||| |||| ||||||||    
T  45925515 ttttctttattaagaatccttaaagagtgtccttaggacactcgttaacaagaccc 45925460  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 13792085 - 13792137
Alignment:
Q  9 ttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaagaccctt 61  Q
    |||||||| || |||||||||||||| ||| | |||| |||||||||||||||    
T  13792085 ttaattaaaaaaccttaaagagtgtcttaaggacactcgttagcaagaccctt 13792137  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 43492213 - 43492269
Alignment:
Q  5 tttcttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaagaccctt 61  Q
    |||||| |||| |||||||||||||||| ||| | |||||| |||| ||||||||||    
T  43492213 tttctttattaggaatccttaaagagtgcccttagggcactcgttaacaagaccctt 43492269  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 19113712 - 19113770
Alignment:
Q  4 ttttcttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaagaccctta 62  Q
    |||||||||||  ||||||||||||| || ||| | |||||| ||||||||||||||||    
T  19113712 ttttcttaatttcgaatccttaaagaatgcccttagggcactcgttagcaagaccctta 19113770  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 248546 - 248603
Alignment:
Q  5 tttcttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaagaccctta 62  Q
    |||||||||| |||| |||||||||||| ||| ||| |||| |||| |||||||||||    
T  248546 tttcttaattgagaaaccttaaagagtgcccttaagacactcgttaacaagaccctta 248603  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 7278249 - 7278315
Alignment:
Q  5 tttcttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaagacccttattaaaattg 71  Q
    |||| ||||| || |||||||||||||| ||| | |||||| |||||||||||||||| || |||||    
T  7278249 tttcgtaattgagtatccttaaagagtgcccttagggcactcgttagcaagacccttactataattg 7278315  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 14452221 - 14452270
Alignment:
Q  10 taattaagaatccttaaagagtgtcctaaaggcacttgttagcaagaccc 59  Q
    ||||| || |||||||||||||||||| ||| |||| |||||||||||||    
T  14452221 taatttagtatccttaaagagtgtccttaagacactcgttagcaagaccc 14452270  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 17126770 - 17126821
Alignment:
Q  5 tttcttaattaagaatccttaaagagtgtcctaaaggcacttgttagcaagac 57  Q
    |||||||||| ||||||| ||||||||| ||||| |||||| |||||||||||    
T  17126770 tttcttaattgagaatccctaaagagtg-cctaagggcactcgttagcaagac 17126821  T

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