View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1998_low_10 (Length: 220)

Name: NF1998_low_10
Description: NF1998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1998_low_10
NF1998_low_10
[»] chr2 (36 HSPs)
chr2 (1-171)||(38549329-38549499)
chr2 (167-220)||(21737395-21737448)
chr2 (169-220)||(34356697-34356748)
chr2 (169-220)||(42674658-42674709)
chr2 (171-220)||(346344-346393)
chr2 (171-220)||(39995130-39995179)
chr2 (172-220)||(9733846-9733894)
chr2 (169-220)||(40950856-40950907)
chr2 (174-220)||(37192545-37192591)
chr2 (171-220)||(6171814-6171863)
chr2 (171-220)||(11071628-11071677)
chr2 (171-220)||(14777497-14777546)
chr2 (171-220)||(37533975-37534024)
chr2 (169-220)||(4559582-4559633)
chr2 (169-220)||(17966006-17966057)
chr2 (174-220)||(2050889-2050935)
chr2 (170-220)||(20426481-20426531)
chr2 (170-220)||(41729128-41729178)
chr2 (171-220)||(2521698-2521747)
chr2 (171-220)||(5770109-5770158)
chr2 (176-220)||(28311701-28311745)
chr2 (176-220)||(37233452-37233496)
chr2 (177-220)||(26310292-26310335)
chr2 (171-218)||(40570045-40570092)
chr2 (173-220)||(41750552-41750599)
chr2 (171-220)||(27357962-27358011)
chr2 (176-220)||(638616-638660)
chr2 (175-220)||(13760968-13761013)
chr2 (171-220)||(45409273-45409322)
chr2 (172-220)||(1988334-1988382)
chr2 (168-220)||(7007596-7007648)
chr2 (176-220)||(14832833-14832877)
chr2 (171-218)||(25455049-25455096)
chr2 (171-220)||(14403232-14403281)
chr2 (175-220)||(18713660-18713705)
chr2 (168-220)||(45694211-45694263)
[»] chr1 (35 HSPs)
chr1 (166-220)||(2430520-2430574)
chr1 (167-220)||(39329632-39329685)
chr1 (168-220)||(6978794-6978846)
chr1 (166-220)||(8332038-8332092)
chr1 (170-220)||(9115861-9115911)
chr1 (171-220)||(3572564-3572613)
chr1 (171-220)||(5806290-5806339)
chr1 (171-220)||(46666732-46666781)
chr1 (171-220)||(47037481-47037530)
chr1 (172-220)||(39930481-39930529)
chr1 (169-220)||(1597339-1597390)
chr1 (171-218)||(2632878-2632925)
chr1 (173-220)||(25789787-25789834)
chr1 (169-220)||(52630797-52630848)
chr1 (171-220)||(6911517-6911566)
chr1 (171-220)||(35187480-35187529)
chr1 (175-220)||(36361806-36361851)
chr1 (171-220)||(38964678-38964727)
chr1 (171-220)||(49822916-49822965)
chr1 (175-220)||(51445083-51445128)
chr1 (172-220)||(20260086-20260134)
chr1 (174-220)||(9831872-9831918)
chr1 (172-218)||(14788749-14788795)
chr1 (171-220)||(5518503-5518552)
chr1 (171-220)||(12190176-12190225)
chr1 (171-220)||(32202330-32202379)
chr1 (172-220)||(1007771-1007819)
chr1 (174-218)||(32824948-32824992)
chr1 (171-220)||(4683373-4683422)
chr1 (171-220)||(29091690-29091739)
chr1 (171-220)||(48916021-48916070)
chr1 (169-220)||(52699463-52699514)
chr1 (175-220)||(31806759-31806804)
chr1 (174-219)||(50190767-50190812)
chr1 (163-191)||(29091387-29091415)
[»] chr8 (26 HSPs)
chr8 (167-220)||(35818419-35818472)
chr8 (168-220)||(38364104-38364156)
chr8 (169-220)||(12710668-12710719)
chr8 (169-220)||(25837934-25837985)
chr8 (171-220)||(1554353-1554402)
chr8 (172-220)||(18726619-18726667)
chr8 (168-220)||(38132733-38132785)
chr8 (169-220)||(16313504-16313555)
chr8 (169-220)||(37392543-37392594)
chr8 (171-220)||(26062167-26062216)
chr8 (171-220)||(32660932-32660981)
chr8 (170-219)||(41228712-41228761)
chr8 (172-220)||(10896217-10896265)
chr8 (173-220)||(42755890-42755937)
chr8 (178-220)||(3050032-3050074)
chr8 (175-220)||(26601941-26601986)
chr8 (176-220)||(7931262-7931306)
chr8 (172-220)||(40197076-40197124)
chr8 (172-220)||(18298135-18298183)
chr8 (169-220)||(5020487-5020538)
chr8 (174-213)||(8635664-8635703)
chr8 (173-220)||(33444627-33444674)
chr8 (168-220)||(35394413-35394465)
chr8 (171-204)||(7317412-7317445)
chr8 (173-218)||(25899657-25899702)
chr8 (174-218)||(21137134-21137178)
[»] chr7 (36 HSPs)
chr7 (168-220)||(11330016-11330068)
chr7 (168-220)||(27248316-27248368)
chr7 (168-220)||(48314145-48314197)
chr7 (169-220)||(9814215-9814266)
chr7 (169-220)||(33378865-33378916)
chr7 (170-220)||(48160589-48160639)
chr7 (171-220)||(8419588-8419637)
chr7 (171-220)||(27213854-27213903)
chr7 (171-220)||(39554206-39554255)
chr7 (173-220)||(43949268-43949315)
chr7 (166-220)||(25924631-25924685)
chr7 (170-220)||(35488187-35488237)
chr7 (170-220)||(45045649-45045699)
chr7 (171-220)||(27419223-27419272)
chr7 (175-220)||(48341385-48341430)
chr7 (168-220)||(9946986-9947038)
chr7 (168-220)||(28904182-28904234)
chr7 (172-220)||(38544217-38544265)
chr7 (172-220)||(40212912-40212960)
chr7 (173-220)||(45265049-45265096)
chr7 (176-220)||(38396370-38396414)
chr7 (172-220)||(44566068-44566116)
chr7 (169-220)||(16825351-16825402)
chr7 (173-220)||(41632365-41632412)
chr7 (173-220)||(45723230-45723277)
chr7 (171-220)||(25098092-25098141)
chr7 (168-220)||(34930461-34930514)
chr7 (168-220)||(11000726-11000778)
chr7 (176-220)||(45448965-45449009)
chr7 (170-220)||(41684020-41684070)
chr7 (174-220)||(44820277-44820323)
chr7 (172-218)||(45440933-45440979)
chr7 (169-205)||(25045615-25045651)
chr7 (168-218)||(30685988-30686038)
chr7 (171-220)||(18824169-18824218)
chr7 (174-218)||(37534105-37534149)
[»] chr5 (18 HSPs)
chr5 (168-220)||(22935908-22935960)
chr5 (169-220)||(28602578-28602629)
chr5 (170-220)||(19065503-19065553)
chr5 (171-220)||(555705-555754)
chr5 (171-220)||(4765559-4765608)
chr5 (171-220)||(12970529-12970578)
chr5 (171-220)||(14206820-14206869)
chr5 (171-220)||(29543014-29543063)
chr5 (176-220)||(6091738-6091782)
chr5 (171-220)||(18412232-18412281)
chr5 (172-220)||(36703897-36703945)
chr5 (174-220)||(32535960-32536006)
chr5 (175-220)||(11855658-11855703)
chr5 (169-220)||(42012176-42012227)
chr5 (173-220)||(6930667-6930714)
chr5 (178-220)||(8406917-8406959)
chr5 (174-220)||(26637045-26637091)
chr5 (171-204)||(27481396-27481429)
[»] scaffold0006 (1 HSPs)
scaffold0006 (169-220)||(201948-201999)
[»] chr3 (23 HSPs)
chr3 (169-220)||(11239117-11239168)
chr3 (169-220)||(40908288-40908339)
chr3 (170-220)||(44952331-44952381)
chr3 (171-220)||(8476307-8476356)
chr3 (171-220)||(24574598-24574647)
chr3 (171-220)||(26849045-26849094)
chr3 (172-220)||(9320448-9320496)
chr3 (168-220)||(20297816-20297868)
chr3 (172-220)||(6231501-6231549)
chr3 (172-220)||(28124436-28124484)
chr3 (172-220)||(47114857-47114905)
chr3 (169-220)||(43715305-43715356)
chr3 (169-220)||(48339754-48339805)
chr3 (174-220)||(1099221-1099267)
chr3 (171-220)||(20414464-20414513)
chr3 (168-220)||(31435919-31435971)
chr3 (176-220)||(33217917-33217961)
chr3 (167-218)||(43132152-43132203)
chr3 (171-220)||(45826799-45826848)
chr3 (171-218)||(29512704-29512751)
chr3 (169-218)||(6831954-6832003)
chr3 (191-220)||(31611004-31611033)
chr3 (168-204)||(24784244-24784280)
[»] chr4 (34 HSPs)
chr4 (170-220)||(45747794-45747844)
chr4 (166-220)||(48879352-48879406)
chr4 (170-220)||(55967998-55968048)
chr4 (167-220)||(936153-936206)
chr4 (171-220)||(6279920-6279969)
chr4 (171-220)||(23686814-23686863)
chr4 (171-220)||(39835306-39835355)
chr4 (171-220)||(40435927-40435976)
chr4 (172-220)||(27762899-27762947)
chr4 (168-220)||(39498852-39498904)
chr4 (168-220)||(39502191-39502243)
chr4 (169-220)||(27555437-27555488)
chr4 (169-220)||(39730290-39730341)
chr4 (169-220)||(41859044-41859095)
chr4 (168-218)||(18405230-18405280)
chr4 (163-220)||(34049587-34049645)
chr4 (171-220)||(25916034-25916083)
chr4 (171-220)||(35999713-35999762)
chr4 (176-220)||(34237424-34237468)
chr4 (168-220)||(42773975-42774027)
chr4 (172-220)||(48518891-48518939)
chr4 (169-220)||(25932468-25932519)
chr4 (169-220)||(43723291-43723342)
chr4 (172-220)||(13229989-13230037)
chr4 (176-220)||(27942770-27942814)
chr4 (169-220)||(18931780-18931831)
chr4 (169-220)||(45596295-45596346)
chr4 (173-220)||(47670389-47670436)
chr4 (174-220)||(41744222-41744268)
chr4 (171-220)||(30415929-30415978)
chr4 (172-220)||(32953550-32953598)
chr4 (184-220)||(8322272-8322308)
chr4 (169-218)||(26165393-26165442)
chr4 (168-204)||(31937865-31937901)
[»] chr6 (10 HSPs)
chr6 (171-220)||(2657723-2657772)
chr6 (171-220)||(7053569-7053618)
chr6 (171-220)||(8029356-8029405)
chr6 (172-220)||(1317041-1317089)
chr6 (169-220)||(14171036-14171087)
chr6 (175-216)||(18897948-18897989)
chr6 (172-208)||(10246222-10246258)
chr6 (169-219)||(6705762-6705812)
chr6 (179-220)||(16968948-16968989)
chr6 (171-220)||(3869528-3869577)
[»] scaffold0189 (1 HSPs)
scaffold0189 (177-220)||(28957-29000)
[»] scaffold0702 (1 HSPs)
scaffold0702 (169-218)||(3562-3611)
[»] scaffold0662 (1 HSPs)
scaffold0662 (169-218)||(4493-4542)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 38549499 - 38549329
Alignment:
Q  1 ttttcagttatatcgaaggatccatttgaaattaaaattaatagttatagaaaaattttaataatgaaagataaaagttccnnnnnnnnnnn--aataat 98  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||||             ||||||    
T  38549499 ttttcagttatatcgaaggatccatttgaaatgaaaaa-aatagttatagaaaaagtttaataatgaaagataaaagttcctttttttttttttaataat 38549401  T
Q  99 gcaatataagctcaaatttgattcattttttctgactgttaatatattattattttttgttgtaaatacttta 171  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38549400 gcaatataagctcaaatttgattcattttt-ctgactgttaatatattattattttttgttgtaaatacttta 38549329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 21737395 - 21737448
Alignment:
Q  167 ctttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21737395 ctttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 21737448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 34356697 - 34356748
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34356697 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 34356748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 42674658 - 42674709
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42674658 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 42674709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 346344 - 346393
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  346344 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 346393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 39995130 - 39995179
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39995130 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 39995179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 9733846 - 9733894
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9733846 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 9733894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 40950856 - 40950907
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40950856 ttagggtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 40950907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 37192591 - 37192545
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37192591 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 37192545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 6171863 - 6171814
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6171863 agggtgtgtttgtttcaagttataattgttgattcccgagaataaaatga 6171814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 11071677 - 11071628
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11071677 agggtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 11071628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 14777497 - 14777546
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14777497 agggtgtgtttgtttcaatttataattgttgattcccgggaataaaatga 14777546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 37534024 - 37533975
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37534024 agggtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 37533975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 4559633 - 4559582
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  4559633 ttagggtgtgtttgtttcaagttataattgttgattcccaagaataaaatga 4559582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 17966057 - 17966006
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  17966057 ttagggtgtgtttgtttcaagttataattgttgattcccgataataaaatga 17966006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 2050935 - 2050889
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  2050935 gtgtgtttgtttcaagttataattgttgattcccgagaataaaatga 2050889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 20426481 - 20426531
Alignment:
Q  170 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  20426481 tagggtgtgtttgtttcaaattatatttgttgattcccgggaataaaatga 20426531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 41729128 - 41729178
Alignment:
Q  170 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  41729128 tagggtgtgtttgtttcaagttataattttttattcccgggaataaaatga 41729178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 2521747 - 2521698
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2521747 agggtgtgtttgtttcaagttataattgttgattcccgaaaataaaatga 2521698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 5770109 - 5770158
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  5770109 agggtatgtttgtttcaagttataattgttgattcctgggaataaaatga 5770158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 28311701 - 28311745
Alignment:
Q  176 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  28311701 gtgtttgtttcaagttatatttgttgattcccgggaataaaatga 28311745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 37233496 - 37233452
Alignment:
Q  176 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  37233496 gtgtttgtttcaagttatatttgttgattcccgggaataaaatga 37233452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 26310335 - 26310292
Alignment:
Q  177 tgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  26310335 tgtttgtttaaagttataattgttgattcccgggaataaaatga 26310292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 40570092 - 40570045
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||    
T  40570092 agggtgtgtttgtttcaagttataattgtagattcctgggaataaaat 40570045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 41750599 - 41750552
Alignment:
Q  173 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||    
T  41750599 ggtgtgtttgtttcaagttataattgttgattcctaggaataaaatga 41750552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 27357962 - 27358011
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||| |||||||||||| || |||||||||    
T  27357962 agggtgtgtttgtttcaagttatatttgttgattcccaggtataaaatga 27358011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 638660 - 638616
Alignment:
Q  176 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||    
T  638660 gtgtttgtttcaagttataattgttgatttccggaaataaaatga 638616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 13761013 - 13760968
Alignment:
Q  175 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||||    
T  13761013 tgtgtttgtttcaagttataattattgattttcgggaataaaatga 13760968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 45409322 - 45409273
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||| ||||||||||||  | |||||||||    
T  45409322 agggtgtgtttgtttcaagttatatttgttgattcccaagtataaaatga 45409273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 1988382 - 1988334
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||| |||||||| ||||||||| | |||||||||||||    
T  1988382 gggtgtgtttgtttgaagttatatttgttgatttctgggaataaaatga 1988334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 7007648 - 7007596
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||| |||||||||||| ||||||||||  ||| |||||||||    
T  7007648 tttagggtgtgtttatttcaagttatatttgttgattcttggggataaaatga 7007596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 14832877 - 14832833
Alignment:
Q  176 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||    
T  14832877 gtgtttgtttcaagttatatttgttgattcctaggaataaaatga 14832833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 25455096 - 25455049
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    |||||||||||||||||||||||| |||| |||||| | |||||||||    
T  25455096 agggtgtgtttgtttcaagttatatttgtagattcctgagaataaaat 25455049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 14403232 - 14403281
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||| ||||| || ||||||||||| || ||||||||||    
T  14403232 agggtgtgtttgtttgaagttgtatttgttgattcctggaaataaaatga 14403281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 18713660 - 18713705
Alignment:
Q  175 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||| ||||||||||  || ||||||||||    
T  18713660 tgtgtttgtttcaagttatatttgttgattcatggtaataaaatga 18713705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 45694263 - 45694211
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||| ||||||||||||||||| | || |||| | |||||||||||||    
T  45694263 tttagggtgcgtttgtttcaagttatattcgtagatttctgggaataaaatga 45694211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 2430574 - 2430520
Alignment:
Q  166 actttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2430574 actttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 2430520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 39329685 - 39329632
Alignment:
Q  167 ctttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39329685 ctttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 39329632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 6978846 - 6978794
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6978846 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 6978794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 8332092 - 8332038
Alignment:
Q  166 actttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8332092 actttagggtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 8332038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 9115911 - 9115861
Alignment:
Q  170 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9115911 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 9115861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 3572564 - 3572613
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3572564 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 3572613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 5806290 - 5806339
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5806290 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 5806339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 46666781 - 46666732
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46666781 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 46666732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 47037530 - 47037481
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47037530 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 47037481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 39930529 - 39930481
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39930529 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 39930481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 1597339 - 1597390
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1597339 ttagggtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 1597390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 2632925 - 2632878
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2632925 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 2632878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 25789834 - 25789787
Alignment:
Q  173 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25789834 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 25789787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 52630848 - 52630797
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52630848 ttagggtgtgtttgtttcaagttataattgttgattcctgggaataaaatga 52630797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 6911566 - 6911517
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6911566 agggtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 6911517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 35187529 - 35187480
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35187529 agggtgtgtttttttcaagttataattgttgattcccgggaataaaatga 35187480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 36361851 - 36361806
Alignment:
Q  175 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  36361851 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 36361806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 38964678 - 38964727
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38964678 agggggtgtttgtttcaagttataattgttgattcccgggaataaaatga 38964727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 49822916 - 49822965
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49822916 agggtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 49822965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 51445083 - 51445128
Alignment:
Q  175 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  51445083 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 51445128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 20260086 - 20260134
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20260086 gggtgtgtttgtttcaagttataattgttgattcctgggaataaaatga 20260134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 9831872 - 9831918
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  9831872 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatga 9831918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 14788795 - 14788749
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  14788795 gggtgtgtttgtttcaagttataatttttgattcccgggaataaaat 14788749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 5518503 - 5518552
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  5518503 agggtgtgtttgtttcaagttatatttgttgattcccaggaataaaatga 5518552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 12190176 - 12190225
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  12190176 agggtgtgtttgtttcaagttataattgttgattttcgggaataaaatga 12190225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 32202330 - 32202379
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  32202330 agggtgtgtttgtttcaagttataattgttgattcccgaaaataaaatga 32202379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 1007819 - 1007771
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  1007819 gggtgtgtttgtttcaagttatatttgttgattcccgagaataaaatga 1007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 32824992 - 32824948
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||    
T  32824992 gtgtgtttgtttcaagttataattgttgatttccggaaataaaat 32824948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 4683373 - 4683422
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||| |||||||||| |||||||||||||||||| | ||||||||||    
T  4683373 agggtgtctttgtttcaatttataattgttgattcccagaaataaaatga 4683422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 29091739 - 29091690
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||| ||||||||||| |  ||||||||||    
T  29091739 agggtgtgtttgtttcaagttatatttgttgattcctgataataaaatga 29091690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 48916021 - 48916070
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||| |||||||||||| ||||||||||| | |||||||||||    
T  48916021 agggtgtgtttatttcaagttatatttgttgattccagagaataaaatga 48916070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 52699463 - 52699514
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||| ||||||||||||||||| | || |||||| |||||||||||||    
T  52699463 ttagggtgcgtttgtttcaagttatattcgtagattcctgggaataaaatga 52699514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 31806759 - 31806804
Alignment:
Q  175 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||| |||| |||||| | |||||||||||    
T  31806759 tgtgtttgtttcaagttatatttgtagattcctgagaataaaatga 31806804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 50190767 - 50190812
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatg 219  Q
    |||||||||||||||| |||||||||| ||| |||| |||||||||    
T  50190767 gtgtgtttgtttcaagatataattgttaatttccggaaataaaatg 50190812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 29091387 - 29091415
Alignment:
Q  163 aatactttagggtgtgtttgtttcaagtt 191  Q
    |||||||||||||||||||||||||||||    
T  29091387 aatactttagggtgtgtttgtttcaagtt 29091415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 35818419 - 35818472
Alignment:
Q  167 ctttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35818419 ctttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 35818472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 38364156 - 38364104
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38364156 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 38364104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 12710719 - 12710668
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12710719 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 12710668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 25837985 - 25837934
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25837985 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 25837934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 1554353 - 1554402
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1554353 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 1554402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 18726619 - 18726667
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18726619 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 18726667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 38132733 - 38132785
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38132733 tttagggtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 38132785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 16313504 - 16313555
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16313504 ttagggtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 16313555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 37392543 - 37392594
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37392543 ttagggtgtatttgtttcaagttataattgttgattcccgggaataaaatga 37392594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 26062216 - 26062167
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26062216 agggtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 26062167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 32660932 - 32660981
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32660932 agggtgtgtttgtttcaagttataattgttgattcctgggaataaaatga 32660981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 41228712 - 41228761
Alignment:
Q  170 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatg 219  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41228712 tagggtgtgtttgtttcaagttataattgttaattcccgggaataaaatg 41228761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 10896217 - 10896265
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10896217 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatga 10896265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 42755937 - 42755890
Alignment:
Q  173 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  42755937 ggtgtgtttgtttcaagttataattgttgattcctgggaataaaatga 42755890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 3050074 - 3050032
Alignment:
Q  178 gtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3050074 gtttgtttcaagttataattgttgattcccgggaataaaatga 3050032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 26601941 - 26601986
Alignment:
Q  175 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  26601941 tgtgtttgtttcaaattataattgttgattcccgggaataaaatga 26601986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 7931306 - 7931262
Alignment:
Q  176 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  7931306 gtgtttgtttcaagttataattgttgattcctgggaataaaatga 7931262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 40197076 - 40197124
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  40197076 gggtatgtttgtttcaagttataattgttgattcccggaaataaaatga 40197124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 18298183 - 18298135
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  18298183 gggtttgtttgtttcaagttataatttttgattctcgggaataaaatga 18298135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 5020487 - 5020538
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||| ||||||||||||||||||||| ||||||||||  |||||||||||||    
T  5020487 ttagagtgtgtttgtttcaagttatatttgttgattcatgggaataaaatga 5020538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 8635703 - 8635664
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaat 213  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  8635703 gtgtgtttgtttcaagttataattgttgattcccaggaat 8635664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 33444627 - 33444674
Alignment:
Q  173 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||||    
T  33444627 ggtgtgtttgtttcaagttatatttgttgattcctgagaataaaatga 33444674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 35394465 - 35394413
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||| |||||||||||||||||| || ||||||| || |||||||||||    
T  35394465 tttagggtttgtttgtttcaagttatatttattgattcacgagaataaaatga 35394413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 7317445 - 7317412
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgatt 204  Q
    |||||||||||||||||||||||| |||||||||    
T  7317445 agggtgtgtttgtttcaagttatatttgttgatt 7317412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 25899702 - 25899657
Alignment:
Q  173 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    |||||||||||||||| ||||| |||| |||||| |||||||||||    
T  25899702 ggtgtgtttgtttcaaattatatttgtagattcctgggaataaaat 25899657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 21137134 - 21137178
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    |||||||||||| |||||||| ||||||||||| | |||||||||    
T  21137134 gtgtgtttgtttgaagttatatttgttgattcctgagaataaaat 21137178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 11330068 - 11330016
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330068 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 11330016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 27248368 - 27248316
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27248368 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 27248316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 48314197 - 48314145
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48314197 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 48314145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 9814215 - 9814266
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9814215 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 9814266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 33378916 - 33378865
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33378916 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 33378865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 48160589 - 48160639
Alignment:
Q  170 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48160589 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 48160639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 8419588 - 8419637
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8419588 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 8419637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 27213854 - 27213903
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27213854 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 27213903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 39554255 - 39554206
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39554255 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 39554206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 43949315 - 43949268
Alignment:
Q  173 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43949315 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 43949268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 25924631 - 25924685
Alignment:
Q  166 actttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25924631 acttaagggtatgtttgtttcaagttataattgttgattcccgggaataaaatga 25924685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 35488187 - 35488237
Alignment:
Q  170 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35488187 tagggtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 35488237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 45045699 - 45045649
Alignment:
Q  170 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45045699 tagggtgtgtttgttttaagttataattgttgattcccgggaataaaatga 45045649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 27419223 - 27419272
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27419223 agggtgtgtttgtttcaagttataattgctgattcccgggaataaaatga 27419272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 48341430 - 48341385
Alignment:
Q  175 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48341430 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 48341385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 9946986 - 9947038
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  9946986 tttagggtgtgtttgtttaaagttataatttttgattcccgggaataaaatga 9947038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 28904182 - 28904234
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  28904182 tttagggtgtgtttgttttaagttataattgttgattcccgagaataaaatga 28904234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 38544265 - 38544217
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38544265 gggtgtgtttgtttcaagttataattgttgattcccggaaataaaatga 38544217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 40212960 - 40212912
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40212960 gggtgtgtttgtttcaagttataattgttgattcgcgggaataaaatga 40212912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 45265049 - 45265096
Alignment:
Q  173 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45265049 ggtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 45265096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 38396370 - 38396414
Alignment:
Q  176 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  38396370 gtgtttgttccaagttataattgttgattcccgggaataaaatga 38396414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 44566116 - 44566068
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  44566116 gggtgtgtttgtttcaagttataattgttgatttccggaaataaaatga 44566068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 16825351 - 16825402
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  16825351 ttagggtgtgtttgtttcaagttataattgttaattcctaggaataaaatga 16825402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 41632365 - 41632412
Alignment:
Q  173 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||    
T  41632365 ggtgtgtttgtttcaagttataattgttgattcctgagaataaaatga 41632412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 45723277 - 45723230
Alignment:
Q  173 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||    
T  45723277 ggtgtgtttgtttcaagttatatttgttgattcccgagaataaaatga 45723230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 25098141 - 25098092
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  25098141 agggtgtgtttgtttcaagttataatttttgattttcgggaataaaatga 25098092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 34930461 - 34930514
Alignment:
Q  168 tttagggtgtgtttgtttcaa-gttataattgttgattcccgggaataaaatga 220  Q
    |||| |||||||||||||||| |||||||||||||||||| |||||||||||||    
T  34930461 tttaaggtgtgtttgtttcaaagttataattgttgattcctgggaataaaatga 34930514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 11000778 - 11000726
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||  |||||||||| || ||||||||||    
T  11000778 tttagggtgtgtttgtttcaagttatatatgttgattcctggaaataaaatga 11000726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 45449009 - 45448965
Alignment:
Q  176 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  45449009 gtgtttgtttcaagttataatttttgattctcgggaataaaatga 45448965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 41684020 - 41684070
Alignment:
Q  170 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||| ||||||||||| | |||||| ||||    
T  41684020 tagggtgtgtttgtttcaagttatatttgttgattcctgagaataatatga 41684070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 44820323 - 44820277
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||  | ||||||||||||    
T  44820323 gtgtgtttgtttcaagttataattgttgattttcaggaataaaatga 44820277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 45440979 - 45440933
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||    
T  45440979 gggtgtgtttgtttcaagttataattgtagattcttgggaataaaat 45440933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 25045615 - 25045651
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattc 205  Q
    |||||||||||||||||||||||||| ||||||||||    
T  25045615 ttagggtgtgtttgtttcaagttatatttgttgattc 25045651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 30685988 - 30686038
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    |||| ||||||||||||||||||||||||||| |||||   ||||||||||    
T  30685988 tttatggtgtgtttgtttcaagttataattgtagattcgttggaataaaat 30686038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 18824218 - 18824169
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||| || |||||||||   |||||||||||||    
T  18824218 agggtgtgtttgtttcaagttgtatttgttgatttttgggaataaaatga 18824169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 37534105 - 37534149
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    |||||||||||||| ||||||||||| |||||| || ||||||||    
T  37534105 gtgtgtttgtttcatgttataattgtagattcctggaaataaaat 37534149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 22935908 - 22935960
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22935908 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 22935960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 28602629 - 28602578
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28602629 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 28602578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 19065503 - 19065553
Alignment:
Q  170 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19065503 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 19065553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 555705 - 555754
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  555705 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 555754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 4765559 - 4765608
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4765559 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 4765608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 12970529 - 12970578
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12970529 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 12970578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 14206820 - 14206869
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14206820 agggtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 14206869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 29543014 - 29543063
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29543014 agggtgtgtttgtttcaagttataattgttgattcctgggaataaaatga 29543063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 6091782 - 6091738
Alignment:
Q  176 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6091782 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 6091738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 18412281 - 18412232
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  18412281 agggtgtgtttgtttcaagttataattattgattcctgggaataaaatga 18412232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 36703945 - 36703897
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||    
T  36703945 gggtgtgtttgtttcaagttataattgttgattatcgggaataaaatga 36703897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 32536006 - 32535960
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  32536006 gtgtgtttgttttaagttataattgttgattcccaggaataaaatga 32535960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 11855658 - 11855703
Alignment:
Q  175 tgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||| | |||||||||||    
T  11855658 tgtgtttgtttcaagttataattgttgattcctgagaataaaatga 11855703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 42012176 - 42012227
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||| ||| |||| |||||||||| ||||||||||||||    
T  42012176 ttagggtgtgtttgtttgaagctatatttgttgattctcgggaataaaatga 42012227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 6930714 - 6930667
Alignment:
Q  173 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||| |||||||||||| ||||||||||| | |||||||||||    
T  6930714 ggtgtgtttatttcaagttatatttgttgattcctgagaataaaatga 6930667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 8406959 - 8406917
Alignment:
Q  178 gtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||  || |||||||||||    
T  8406959 gtttgtttcaagttataattgttgattttcgagaataaaatga 8406917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 26637045 - 26637091
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||| |||||||||   |||||||||||||    
T  26637045 gtgtgtttgtttcaagttatatttgttgattaatgggaataaaatga 26637091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 27481429 - 27481396
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgatt 204  Q
    ||||||||||||||||||||||||||| ||||||    
T  27481429 agggtgtgtttgtttcaagttataatttttgatt 27481396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 201999 - 201948
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  201999 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 201948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 11239117 - 11239168
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11239117 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 11239168  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 40908339 - 40908288
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40908339 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 40908288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 44952381 - 44952331
Alignment:
Q  170 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44952381 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 44952331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 8476307 - 8476356
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8476307 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 8476356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 24574647 - 24574598
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24574647 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 24574598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 26849094 - 26849045
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26849094 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 26849045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 9320448 - 9320496
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9320448 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 9320496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 20297868 - 20297816
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20297868 tttagggtgtgtttgtttcaagttataattgttgattcccggaaataaaatga 20297816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 6231501 - 6231549
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6231501 gggtgtgtttgtttcaagttataattgttgattcccgagaataaaatga 6231549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 28124436 - 28124484
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28124436 gggtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 28124484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 47114857 - 47114905
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47114857 gggtgtgtttgtttcaagttataattgttgattcctgggaataaaatga 47114905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 43715305 - 43715356
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  43715305 ttagggtgtgtttgtttcaagttataattgttgattcccgaaaataaaatga 43715356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 48339754 - 48339805
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  48339754 ttaggatgtgtttgtttcaagttataattgttgatttccgggaataaaatga 48339805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 1099267 - 1099221
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  1099267 gtgtgtttgttttaagttataattgttgattcccgggaataaaatga 1099221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 20414464 - 20414513
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||    
T  20414464 agggtgtgtttgtttcaagttataattgttgatttctgggaataaaatga 20414513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 31435919 - 31435971
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||| ||||||||||| | |||||||||||    
T  31435919 tttagggtgtgtttgtttcaagttatatttgttgattcctgagaataaaatga 31435971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 33217917 - 33217961
Alignment:
Q  176 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  33217917 gtgtttgtttcaagttataattgttgatttccgggaataaaatga 33217961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 43132152 - 43132203
Alignment:
Q  167 ctttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    |||||||||||||||||||||||||||| |||||||||| || |||||||||    
T  43132152 ctttagggtgtgtttgtttcaagttatatttgttgattctcgagaataaaat 43132203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 45826848 - 45826799
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||  |||| |||||| |||||||||||||    
T  45826848 agggtgtgtttgtttcaagttatcgttgtagattccagggaataaaatga 45826799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 29512751 - 29512704
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    ||||||||||||||||||||||||||| || ||| | |||||||||||    
T  29512751 agggtgtgtttgtttcaagttataatttttaatttctgggaataaaat 29512704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 6831954 - 6832003
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    |||||||||||||||||||| ||||| |||| |||||| || ||||||||    
T  6831954 ttagggtgtgtttgtttcaacttatatttgtagattcctggaaataaaat 6832003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 31611004 - 31611033
Alignment:
Q  191 tataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||    
T  31611004 tataattgttgattcccgggaataaaatga 31611033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 24784280 - 24784244
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgatt 204  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  24784280 tttagggtgtgtttgttttaagttataattgtagatt 24784244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 45747794 - 45747844
Alignment:
Q  170 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45747794 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 45747844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 48879406 - 48879352
Alignment:
Q  166 actttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48879406 acttaagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 48879352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 55967998 - 55968048
Alignment:
Q  170 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55967998 tagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 55968048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 936206 - 936153
Alignment:
Q  167 ctttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  936206 ctttagggtgtgtttgtttcaagttataattgttgattcccgagaataaaatga 936153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 6279920 - 6279969
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6279920 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 6279969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 23686863 - 23686814
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23686863 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 23686814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 39835306 - 39835355
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39835306 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 39835355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 40435976 - 40435927
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40435976 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 40435927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 27762899 - 27762947
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27762899 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 27762947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 39498904 - 39498852
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39498904 tttagggtgtgtttgtttcaagttataattgttgattcccggaaataaaatga 39498852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 39502243 - 39502191
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39502243 tttagggtgtgtttgtttcaagttataattgttgattcccggaaataaaatga 39502191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 27555488 - 27555437
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27555488 ttagggtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 27555437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 39730290 - 39730341
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39730290 ttagggtgtgtttgtttcaagttataatttttgattcccgggaataaaatga 39730341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 41859044 - 41859095
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41859044 ttagggtgtgtttgtttcaagttataattgttgatttccgggaataaaatga 41859095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 18405230 - 18405280
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18405230 tttagggtgtgtttgtttcaagttataattgttgattcccgagaataaaat 18405280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 34049587 - 34049645
Alignment:
Q  163 aatacttta-gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34049587 aatactttatgggtgtgtttgtttcaagttataattgttgattcccggaaataaaatga 34049645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 25916034 - 25916083
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25916034 agggtgtgtttgtttcaagttataatttttgattcccgggaataaaatga 25916083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 35999762 - 35999713
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35999762 agggtgtgtttgtttcaagttataattgttgattctcgggaataaaatga 35999713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 34237424 - 34237468
Alignment:
Q  176 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34237424 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 34237468  T

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Target: chr4; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 42774027 - 42773975
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  42774027 tttagggtgtgtttgtttcaagttataattgttgatttctgggaataaaatga 42773975  T

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Target: chr4; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 48518891 - 48518939
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48518891 gggtgtgtttgtttcaagttataatttttgattcccgggaataaaatga 48518939  T

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Target: chr4; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 25932519 - 25932468
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  25932519 ttagggtgtgtttgtttcaagttataattgttgattcctaggaataaaatga 25932468  T

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Target: chr4; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 43723342 - 43723291
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  43723342 ttagggtgtgtttgtttcaagttataattgttgattcccgaaaataaaatga 43723291  T

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Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 13229989 - 13230037
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||    
T  13229989 gggtgtgtttgtttcaagttataattttttattcccgggaataaaatga 13230037  T

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Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 27942814 - 27942770
Alignment:
Q  176 gtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  27942814 gtgtttgtttcaagttataattgttgattcccggaaataaaatga 27942770  T

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Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 18931831 - 18931780
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||| ||||||||||||||||||||||||||||||| | |||||||||||||    
T  18931831 ttagagtgtgtttgtttcaagttataattgttgatttctgggaataaaatga 18931780  T

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Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 45596346 - 45596295
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||||||    
T  45596346 ttagggtgcgtttgtttcaagttataattgttgattttcgggaataaaatga 45596295  T

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Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 47670436 - 47670389
Alignment:
Q  173 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||    
T  47670436 ggtgtgtttgtttcaagttataattgttgattcctggaaataaaatga 47670389  T

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Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 41744222 - 41744268
Alignment:
Q  174 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||    
T  41744222 gtgtgtttatttcaagttataattgttgatttccgggaataaaatga 41744268  T

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Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 30415978 - 30415929
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  30415978 agggtgtgtttgtttcaagttatatttgttgattcccgataataaaatga 30415929  T

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Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 32953598 - 32953550
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  32953598 gggtgtgtttgtctcaagttataattgttgattcccaggaacaaaatga 32953550  T

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Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 8322308 - 8322272
Alignment:
Q  184 ttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||| |||||||||||||    
T  8322308 ttcaagttataattgttgattcctgggaataaaatga 8322272  T

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Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 26165442 - 26165393
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    ||||||||||||||||||| |||||| |||| |||||| | |||||||||    
T  26165442 ttagggtgtgtttgtttcatgttatatttgtagattcctgagaataaaat 26165393  T

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Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 31937865 - 31937901
Alignment:
Q  168 tttagggtgtgtttgtttcaagttataattgttgatt 204  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  31937865 tttatggtgtgtttgtttcaagttataattgtagatt 31937901  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 2657772 - 2657723
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657772 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 2657723  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 7053569 - 7053618
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7053569 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 7053618  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 8029405 - 8029356
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8029405 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 8029356  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 1317089 - 1317041
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1317089 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 1317041  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 14171087 - 14171036
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14171087 ttagggtgtgtttgtttcaagttataatttttgattcccgggaataaaatga 14171036  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 18897989 - 18897948
Alignment:
Q  175 tgtgtttgtttcaagttataattgttgattcccgggaataaa 216  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  18897989 tgtgtttgtttcaagttataattgttgattcccggaaataaa 18897948  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 10246222 - 10246258
Alignment:
Q  172 gggtgtgtttgtttcaagttataattgttgattcccg 208  Q
    |||||||||||||||||||||||||||||||||||||    
T  10246222 gggtgtgtttgtttcaagttataattgttgattcccg 10246258  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 6705762 - 6705812
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatg 219  Q
    |||||||||||||||||||||||||| ||||||||||   |||||||||||    
T  6705762 ttagggtgtgtttgtttcaagttatatttgttgattcattggaataaaatg 6705812  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 16968989 - 16968948
Alignment:
Q  179 tttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||||||| | |||||||||||    
T  16968989 tttgtttcaagttataattgttgattcctgagaataaaatga 16968948  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 3869577 - 3869528
Alignment:
Q  171 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    |||||||||||||||||||||||  |||| |||| | |||||||||||||    
T  3869577 agggtgtgtttgtttcaagttatttttgtagatttctgggaataaaatga 3869528  T

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Target: scaffold0189 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 28957 - 29000
Alignment:
Q  177 tgtttgtttcaagttataattgttgattcccgggaataaaatga 220  Q
    ||||||||||||||||||||||||||||  ||||||||||||||    
T  28957 tgtttgtttcaagttataattgttgattttcgggaataaaatga 29000  T

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Target: scaffold0702 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 3562 - 3611
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    |||||||||||||||||||||||||| |||| |||| |  ||||||||||    
T  3562 ttagggtgtgtttgtttcaagttatatttgtagatttctaggaataaaat 3611  T

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Target: scaffold0662 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 4542 - 4493
Alignment:
Q  169 ttagggtgtgtttgtttcaagttataattgttgattcccgggaataaaat 218  Q
    |||||||||||||||||||||||||| |||| |||| |  ||||||||||    
T  4542 ttagggtgtgtttgtttcaagttatatttgtagatttctaggaataaaat 4493  T

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