View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1998_low_2 (Length: 452)
Name: NF1998_low_2
Description: NF1998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1998_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 78 - 433
Target Start/End: Original strand, 52719895 - 52720249
Alignment:
| Q |
78 |
gagaccaaaacatataacggagaaggacttaagagatctaaacgaattttttattacttgactaaagcgatactnnnnnnnnnnncgttaagggaccaaa |
177 |
Q |
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| T |
52719895 |
gagaccaaaacatataacggagaaggacttaagagatctaaacggactttttattacttgactaaagcaatactaaaaaaaaaag-gttaagggaccaaa |
52719993 |
T |
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| Q |
178 |
acaacattttagcctataattaatacccttaatgcttgtgaaacctccatttgttaaccaagtttgtgccagccagcctacattatttgttacagccata |
277 |
Q |
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| T |
52719994 |
acaacattttagcctataattaataccctaaatgcctgtgaagcctccatttgttaaccaagtttgtgccagccagcctacattatttgttacagccata |
52720093 |
T |
|
| Q |
278 |
aatcaactgtaacccaaataaaaatgaccctgcctgattgagacgctttcttccactctgctaacatatataaaatgtaaaattagtgttacttttcatt |
377 |
Q |
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| T |
52720094 |
aatcaactgtaacccaaataaaaatgaccctgcctgatcgagacgctttcttccactctgctaacatatataaaatgtaaaattagtgttacttttcatt |
52720193 |
T |
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| Q |
378 |
tcatctcactaacaattacaccttcaattaaactttagcaattcaatccatggtta |
433 |
Q |
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| T |
52720194 |
tcatctcactaacaattacaccttcaattaaactttagcaattcaatccatggtta |
52720249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 196 - 394
Target Start/End: Original strand, 52711144 - 52711349
Alignment:
| Q |
196 |
attaatacccttaatgcttgtgaaacctccatttgttaaccaagtttgtgccagccagcctacattatttgttacagccataaatcaactgtaacccaaa |
295 |
Q |
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| T |
52711144 |
attaataccctaaatgcttgtggagcttccatttgttaaccaagtttgtgccggccagcctacattatttgttacagccataaatcaattgtaacccaaa |
52711243 |
T |
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| Q |
296 |
taaaa-------atgaccctgcctgattgagacgctttcttccactctgctaacatatataaaatgtaaaattagtgttacttttcatttcatctcacta |
388 |
Q |
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| T |
52711244 |
taaaaatgatggatgaccttgcctgattgagacgctttcttacactctgctaacctatataaaatgcaaaattagtgttacttttcatttcatctcacta |
52711343 |
T |
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| Q |
389 |
acaatt |
394 |
Q |
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| T |
52711344 |
gcaatt |
52711349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 52719697 - 52719763
Alignment:
| Q |
11 |
gagaagaaaaggaagaaagggaaaaacaatatgagatggtgatggtgtactattacttacaatagat |
77 |
Q |
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| T |
52719697 |
gagaagaaaaggaagaaagggaaaaacaatatgagatggtgatggtgtactattacttacaatagat |
52719763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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