View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1998_low_6 (Length: 338)

Name: NF1998_low_6
Description: NF1998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1998_low_6
NF1998_low_6
[»] chr1 (4 HSPs)
chr1 (9-338)||(29452455-29452787)
chr1 (90-334)||(29467013-29467257)
chr1 (79-334)||(29423931-29424186)
chr1 (88-332)||(29442545-29442789)
[»] chr2 (23 HSPs)
chr2 (104-331)||(14551040-14551266)
chr2 (90-241)||(10336621-10336772)
chr2 (156-283)||(8572755-8572882)
chr2 (137-257)||(10372676-10372796)
chr2 (159-264)||(9292715-9292820)
chr2 (137-252)||(9321790-9321905)
chr2 (156-257)||(9316816-9316920)
chr2 (156-240)||(9283428-9283512)
chr2 (159-259)||(10353937-10354037)
chr2 (137-232)||(9329418-9329513)
chr2 (156-231)||(12011847-12011922)
chr2 (137-234)||(10348620-10348717)
chr2 (137-212)||(9060333-9060408)
chr2 (136-241)||(9275333-9275438)
chr2 (167-232)||(9357935-9358000)
chr2 (158-231)||(12018170-12018243)
chr2 (156-212)||(9365434-9365490)
chr2 (158-241)||(7114901-7114984)
chr2 (125-231)||(7612716-7612822)
chr2 (156-242)||(12005419-12005505)
chr2 (156-226)||(11986779-11986849)
chr2 (124-231)||(8578747-8578854)
chr2 (125-224)||(17565337-17565436)
[»] chr8 (1 HSPs)
chr8 (156-307)||(41965976-41966130)
[»] scaffold0667 (1 HSPs)
scaffold0667 (137-260)||(5250-5373)
[»] chr3 (1 HSPs)
chr3 (100-280)||(37463293-37463473)
[»] chr4 (1 HSPs)
chr4 (156-259)||(26575671-26575774)
[»] chr5 (1 HSPs)
chr5 (146-226)||(36225575-36225655)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 338
Target Start/End: Original strand, 29452455 - 29452787
Alignment:
Q  9 gaaatgaaaaaaccctaaaccctagctacaaccttccttccttcctt----ttcctnnnnnnnncccttccttccttccaagctccaatggcggatcttc 104  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    |||||        ||||||||||||||||||||||||||||||||||||    
T  29452455 gaaatgaaaacaccctaaaccctagctacaaccttccttccttccttccttttcctaaaaaaa-cccttccttccttccaagctccaatggcggatcttc 29452553  T
Q  105 cgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctca 204  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452554 cgccggagatacttaccggtatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctca 29452653  T
Q  205 caacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgatttctctaacctaacc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452654 caacttcatcaaacttcacctccaaaattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaacc 29452753  T
Q  305 acccgcattgaactcaatcttcctttcaaactcc 338  Q
    ||||||||| ||||||||||||||||||||||||    
T  29452754 acccgcattaaactcaatcttcctttcaaactcc 29452787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 90 - 334
Target Start/End: Original strand, 29467013 - 29467257
Alignment:
Q  90 caatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatc 189  Q
    ||||||| |||||||| || || ||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29467013 caatggctgatcttcctccggaaataatcaccggaatcatctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatc 29467112  T
Q  190 cctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgat 289  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||| | |||||||||||||||||||    
T  29467113 cctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgat 29467212  T
Q  290 ttctctaacctaaccacccgcattgaactcaatcttcctttcaaa 334  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  29467213 ttctctaacctaaccacccgcattaaactcaatcttcctttcaaa 29467257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 79 - 334
Target Start/End: Complemental strand, 29424186 - 29423931
Alignment:
Q  79 cttccaagctccaatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaa 178  Q
    |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29424186 cttccaagctccaatgacggatcttccgccggagatactcaccggaatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaa 29424087  T
Q  179 tcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctacc 278  Q
    ||||||||||| ||||||||||| |||| ||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  29424086 tcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattccttcaatcgttccttaatccttcgacacaactctgatttctacc 29423987  T
Q  279 aaatcaacgatttctctaacctaaccacccgcattgaactcaatcttcctttcaaa 334  Q
    ||||||||||||||||||||||||| |||  | || ||||||||| ||||||||||    
T  29423986 aaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctttcaaa 29423931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 88 - 332
Target Start/End: Original strand, 29442545 - 29442789
Alignment:
Q  88 tccaatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaa 187  Q
    |||||||| |||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||| || ||||||||||||    
T  29442545 tccaatggtggatcttccgccggagatacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaa 29442644  T
Q  188 tccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacg 287  Q
    |||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||| | |    
T  29442645 tccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaag 29442744  T
Q  288 atttctctaacctaaccacccgcattgaactcaatcttcctttca 332  Q
    |||||||||||||||||||| || || |||||||  |||||||||    
T  29442745 atttctctaacctaaccaccggcgttaaactcaacattcctttca 29442789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 104 - 331
Target Start/End: Complemental strand, 14551266 - 14551040
Alignment:
Q  104 ccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctc 203  Q
    ||||| |||||||||||| | ||||||||||||||||||  |||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||| |    
T  14551266 ccgccggagatactcaccagaatcctctctctgttaccgccacaatccctcctccaattccgatcaacttcaaaatcacttcaatccctaatcgattccc 14551167  T
Q  204 acaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgatttctctaacctaac 303  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||| ||   | |||||||||||||||||||||||||||||||    
T  14551166 acaacttcatcaaacttcacct-aaaaattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaac 14551068  T
Q  304 cacccgcattgaactcaatcttcctttc 331  Q
    |||||||||| |||||||||||||||||    
T  14551067 cacccgcattaaactcaatcttcctttc 14551040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 90 - 241
Target Start/End: Complemental strand, 10336772 - 10336621
Alignment:
Q  90 caatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatc 189  Q
    ||||||||||||||||||| || || ||| |||  ||| |||| |  ||||||||| |||| ||  |||||||||| |||||||||||||||||| ||||    
T  10336772 caatggcggatcttccgccggaaattctctccgaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatc 10336673  T
Q  190 cctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaat 241  Q
    | |||||||||||||||| |||||||| |||||||| |||||||||||||||    
T  10336672 cttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaat 10336621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 8572755 - 8572882
Alignment:
Q  156 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 255  Q
    |||||||||| ||||| |||||||||||| ||||  |||||||||| |||||||||| ||| ||||||||| |||||||||||||||||||||||||  |    
T  8572755 tccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcat 8572854  T
Q  256 tcgacacaactctgttttctaccaaatc 283  Q
    ||||| |||||  | | |||||||||||    
T  8572855 tcgacgcaactacgatatctaccaaatc 8572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 137 - 257
Target Start/End: Complemental strand, 10372796 - 10372676
Alignment:
Q  137 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 236  Q
    ||||||||| |||| ||  |||||||||| ||||| ||||||||| || ||||  |||||||||| ||||| |||||||| |||||||||||||||||||    
T  10372796 ttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaattccc 10372697  T
Q  237 tcaatcgttccttaattcttc 257  Q
    ||||||| |||||||| ||||    
T  10372696 tcaatcgatccttaatccttc 10372676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 9292820 - 9292715
Alignment:
Q  159 gattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcg 258  Q
    ||||||| ||||  |||||||||||| ||||||||||||||||||||| |||||  || ||||||||| ||||||||||||| || |||||||| |||||    
T  9292820 gattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcg 9292721  T
Q  259 acacaa 264  Q
    ||||||    
T  9292720 acacaa 9292715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 9321905 - 9321790
Alignment:
Q  137 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 236  Q
    ||||||||| |||| ||  ||| |||||| ||||| || ||||||||| ||||| |||||||||||||| |||||||||| ||||| ||| |||||||||    
T  9321905 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccc 9321806  T
Q  237 tcaatcgttccttaat 252  Q
    ||| ||| ||||||||    
T  9321805 tcagtcgatccttaat 9321790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 9316920 - 9316816
Alignment:
Q  156 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaa---aattccctcaatcgttccttaat 252  Q
    |||||||||| ||||| |||||||||||| ||||  |||| |||||||||||||||||||| ||||||||| ||   |||||||||||||| ||||||||    
T  9316920 tccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaat 9316821  T
Q  253 tcttc 257  Q
     ||||    
T  9316820 ccttc 9316816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 9283428 - 9283512
Alignment:
Q  156 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaa 240  Q
    |||||||||| ||||| || |||||||||| ||||||||| ||||||||||| |||||||| ||||||||| ||| |||||||||    
T  9283428 tccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaa 9283512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 10354037 - 10353937
Alignment:
Q  159 gattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcg 258  Q
    ||||||| ||||| ||||||||| || ||||||||||||||||  |||| |||||||| |||||||||  |||||||| |||||  ||||||||||||||    
T  10354037 gattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatccttaattcttcg 10353938  T
Q  259 a 259  Q
    |    
T  10353937 a 10353937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 9329513 - 9329418
Alignment:
Q  137 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaat 232  Q
    ||||||||| |||| ||  |||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||  || ||||||||| |||||    
T  9329513 ttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 12011847 - 12011922
Alignment:
Q  156 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaa 231  Q
    |||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||| ||||    
T  12011847 tccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 10348717 - 10348620
Alignment:
Q  137 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattc 234  Q
    ||||||||| |||| ||  |||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||  |||||||    
T  10348717 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 9060333 - 9060408
Alignment:
Q  137 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttca 212  Q
    |||||||| ||||| ||  |||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||    
T  9060333 ttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttca 9060408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 9275438 - 9275333
Alignment:
Q  136 gttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattcc 235  Q
    |||||| |||||||| ||  || ||||||| |||| ||||||||||||| ||||  | || ||||| |||||||||||||| ||||| ||| ||||||||    
T  9275438 gttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttcatctcaaaaattcc 9275339  T
Q  236 ctcaat 241  Q
    ||||||    
T  9275338 ctcaat 9275333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 9358000 - 9357935
Alignment:
Q  167 tcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaat 232  Q
    ||||| |||||||||||| ||||| |||||||||||||||||||||| || ||||||||| |||||    
T  9358000 tcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 12018170 - 12018243
Alignment:
Q  158 cgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaa 231  Q
    |||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||| ||| ||||| ||| ||||    
T  12018170 cgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcaactcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 9365490 - 9365434
Alignment:
Q  156 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttca 212  Q
    |||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||    
T  9365490 tccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttca 9365434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 7114901 - 7114984
Alignment:
Q  158 cgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaat 241  Q
    |||||||| ||||| |||||||||||| ||||| |||||||||| ||||| |||||||| ||||| ||  |||||||| |||||    
T  7114901 cgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattccttcaat 7114984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 7612822 - 7612716
Alignment:
Q  125 atcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacc 224  Q
    ||||||||||  |||||||||||| ||||| |||||||||| ||||  || ||||| ||| ||||| |||| ||||| ||||||||||  || |||||||    
T  7612822 atcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacc 7612723  T
Q  225 tccaaaa 231  Q
    || ||||    
T  7612722 tcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 12005419 - 12005505
Alignment:
Q  156 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatc 242  Q
    |||||||||| ||||| ||| |||| ||| ||||| ||||||||||||||||||||| ||| ||||| ||  ||||||| |||||||    
T  12005419 tccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaaccttcatctaaaaaattctctcaatc 12005505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 11986779 - 11986849
Alignment:
Q  156 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctc 226  Q
    |||||||||| ||||| ||| |||| ||| ||||| |||| |||||||||||||||| ||| |||||||||    
T  11986779 tccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatcttcacctc 11986849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 8578747 - 8578854
Alignment:
Q  124 tatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcac 223  Q
    ||||||||| |  |||||||||||||||||  |||||||||| ||||  || |||||||||| |||| | || ||||| |||| ||||| ||||| | ||    
T  8578747 tatcctctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattac 8578846  T
Q  224 ctccaaaa 231  Q
    ||| ||||    
T  8578847 ctcaaaaa 8578854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 17565337 - 17565436
Alignment:
Q  125 atcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacc 224  Q
    ||||||||||  ||||| |||||||||||| ||||| |||| ||||| || ||||||||| |||   |||| ||||| || ||||||| ||| |||||||    
T  17565337 atcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttcacc 17565436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 307
Target Start/End: Original strand, 41965976 - 41966130
Alignment:
Q  156 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 255  Q
    |||||||||| |||||||| |||||||||| |||| |||||||||| |||||||||||||| |||||||||  ||| ||||||||||| |||||||| ||    
T  41965976 tccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatcct 41966075  T
Q  256 tcgacacaactctgttttctaccaaatc---aacgatttctctaacctaaccacc 307  Q
    ||||| |||| ||| | |||||||  ||    | |||||||||||||||||||||    
T  41966076 tcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccacc 41966130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 137 - 260
Target Start/End: Complemental strand, 5373 - 5250
Alignment:
Q  137 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 236  Q
    ||||||||| |||| ||  |||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||||| | |||||||||    
T  5373 ttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccc 5274  T
Q  237 tcaatcgttccttaattcttcgac 260  Q
    ||||| | ||||| || |||||||    
T  5273 tcaatagatccttcatccttcgac 5250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 100 - 280
Target Start/End: Complemental strand, 37463473 - 37463293
Alignment:
Q  100 tcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgat 199  Q
    ||||||||| || |||||| |||  |||||||| |  ||||| ||| |||| ||  |||||||||| ||||| |||||||||||| ||||  ||||||||    
T  37463473 tcttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgat 37463374  T
Q  200 tctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaa 280  Q
    ||||||||||||||||| ||||| ||| ||||| |||||||||  ||| ||||  ||||| ||||||| | | ||||||||    
T  37463373 tctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcattcgaaacaactccgatatctaccaa 37463293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 26575774 - 26575671
Alignment:
Q  156 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 255  Q
    |||||||||| ||||| |||||||||||| ||| | ||||||||||  |||| |||||||| |||||||||  |||||||| |||||| |||||||| ||    
T  26575774 tccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatccttaatcct 26575675  T
Q  256 tcga 259  Q
    ||||    
T  26575674 tcga 26575671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 36225655 - 36225575
Alignment:
Q  146 caatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctc 226  Q
    ||||||||| |||||||||| ||||| |||||||||||| ||||  |||||||||| ||||||||||  || |||||||||    
T  36225655 caatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctc 36225575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University