View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19990_low_1 (Length: 478)

Name: NF19990_low_1
Description: NF19990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19990_low_1
NF19990_low_1
[»] chr8 (14 HSPs)
chr8 (19-468)||(23770619-23771088)
chr8 (201-463)||(5019317-5019594)
chr8 (19-240)||(5003945-5004166)
chr8 (390-468)||(23771082-23771160)
chr8 (164-244)||(5004165-5004245)
chr8 (201-276)||(5004301-5004376)
chr8 (173-227)||(5555626-5555680)
chr8 (186-227)||(5019197-5019238)
chr8 (390-456)||(5019593-5019656)
chr8 (390-455)||(5004865-5004927)
chr8 (200-237)||(16426624-16426661)
chr8 (390-434)||(5005005-5005049)
chr8 (410-468)||(5004813-5004871)
chr8 (427-456)||(5019799-5019828)
[»] scaffold0275 (8 HSPs)
scaffold0275 (201-468)||(20950-21228)
scaffold0275 (116-238)||(6827-6949)
scaffold0275 (116-238)||(12464-12586)
scaffold0275 (173-232)||(6758-6817)
scaffold0275 (423-468)||(11670-11715)
scaffold0275 (173-232)||(12395-12454)
scaffold0275 (183-232)||(21302-21351)
scaffold0275 (390-456)||(11610-11676)
[»] chr4 (1 HSPs)
chr4 (194-227)||(46302991-46303024)


Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Original strand, 23770619 - 23771088
Alignment:
Q  19 tcatcagccttatgaaaggcttgaaagccttcgaaaggcctttgaagggcaatctcaagttgaggctttagctttagaagagttggaggttgctattgcg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23770619 tcatcagccttatgaaaggcttgaaagccttcgaaaggcctttgaagggcaatctcaagttgaggctttagctttagaagagttggaggttgctattgcg 23770718  T
Q  119 gctgaggctttagcttttgaagagatggaggttgctattttggccgccattgaaaagggtcgaaacaaggctttagctttacagaagaaggaagagttgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23770719 gctgaggctttagcttttgaagagatggaggttgctattttggccgccattgaaaagggtcgaaacaaggctttagctttacagaagaaggaagagttgg 23770818  T
Q  219 aggctgatagggctgtggctgctgatgcgagccgaagtgatgatgaaagaacagggaatgagatgacct--------------------gagagagagag 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||    
T  23770819 aggctgatagggctgtggctgctgatgcgagccgaagtgatgatgaaagaacagggaatgagatgacctgagagagagagagagagagagagagagagag 23770918  T
Q  299 gctcaattattaatgttggagcagttactgaagtactcaattataggtttgaaatttatgtgttagtgagttatttatgtgttcgtgtgtggcttatgtt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23770919 gctcaattattaatgttggagcagttactgaagtactcaattataggtttgaaatttatgtgttagtgagttatttatgtgttcgtgtgtggcttatgtt 23771018  T
Q  399 gttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgcctatg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23771019 gttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgcttatg 23771088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 201 - 463
Target Start/End: Original strand, 5019317 - 5019594
Alignment:
Q  201 agaagaaggaagagttggaggctgatagggctgtggctgctgatgcgagccgaagtgatgatgaaagaacagggaa------tgagatgacctgagagag 294  Q
    |||||| ||||||| ||||||||||||||||||||  ||||||| |||||| ||||||||||||||||| ||||||      |||||||||| ||||||     
T  5019317 agaagagggaagaggtggaggctgatagggctgtgcttgctgatacgagcccaagtgatgatgaaagaagagggaaaaagaatgagatgacc-gagagaa 5019415  T
Q  295 agag------gctcaattattaatgttggagcagttactgaagtactcaattataggtttgaaatttatgtgttagtgagttatttatgtgttcgtgtgt 388  Q
    ||||      ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||    
T  5019416 agagaaaaaagctcaattattaatgttggagcagttattgaagtactcaattataggtttgaaatttatgtgttagtgggttatttatgtgttcgtacgt 5019515  T
Q  389 ggcttatgttgttggctaaaagagaatcgtattgtagaa----ggactaatttatgcatgtttgttattgtgtacctgc 463  Q
     ||||||||||||||||||||||||||||||||| ||||    ||||||||||||||||||||||||||||||||||||    
T  5019516 agcttatgttgttggctaaaagagaatcgtattgcagaaggttggactaatttatgcatgtttgttattgtgtacctgc 5019594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 5003945 - 5004166
Alignment:
Q  19 tcatcagccttatgaaaggcttgaaagccttcgaaaggcctttgaagggcaatctcaagttgaggctttagctttagaagagttggaggttgctattgcg 118  Q
    ||||||||||| ||||||| || | ||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| | | |    
T  5003945 tcatcagccttttgaaaggattaagagccttcgagaggccttagaaggacaatctcaagttgaggcttcagctttagaagagttggaggttgctttagag 5004044  T
Q  119 gctgaggctttagcttttgaagagatggaggttgctattttggccgccattgaaaagggtcgaaacaaggctttagctttacagaagaaggaagagttgg 218  Q
    ||||||||||||||||| |||||| |||||| |||||||||||| |||||| |||| |||||| || |||||||||||||||||||||||||||||||||    
T  5004045 gctgaggctttagctttagaagagttggaggctgctattttggctgccattcaaaaaggtcgagacgaggctttagctttacagaagaaggaagagttgg 5004144  T
Q  219 aggctgatagggctgtggctgc 240  Q
    | ||||||| ||||| ||||||    
T  5004145 aagctgatatggctgaggctgc 5004166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 390 - 468
Target Start/End: Original strand, 23771082 - 23771160
Alignment:
Q  390 gcttatgttgttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgcctatg 468  Q
    |||||||||||| |||  |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  23771082 gcttatgttgttagcttcaagataattgtattctagaaggactaatttatgcatgtttgttattgtgtacctgcttatg 23771160  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 5004165 - 5004245
Alignment:
Q  164 gccattgaaaagggtcgaaacaaggctttagctttacagaagaaggaagagttggaggctgatagggctgtggctgctgat 244  Q
    |||||| | |||||||||||  |||| ||||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  5004165 gccattcagaagggtcgaaatgaggcattagctttacagaagaaggaagagttggaggctgatacggctgtgcctactgat 5004245  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 5004301 - 5004376
Alignment:
Q  201 agaagaaggaagagttggaggctgatagggctgtggctgctgatgcgagccgaagtgatgatgaaagaacagggaa 276  Q
    |||||| | |||||||||||||||| |||| ||||||| ||||| |||||| | ||||||||||||||| ||||||    
T  5004301 agaagaggaaagagttggaggctgacagggttgtggctactgattcgagcccaggtgatgatgaaagaagagggaa 5004376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 5555626 - 5555680
Alignment:
Q  173 aagggtcgaaacaaggctttagctttacagaagaaggaagagttggaggctgata 227  Q
    |||| |||||||||||||||||||||| |||||||| ||||||| ||||||||||    
T  5555626 aaggctcgaaacaaggctttagctttaaagaagaagcaagagtttgaggctgata 5555680  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 5019197 - 5019238
Alignment:
Q  186 aggctttagctttacagaagaaggaagagttggaggctgata 227  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  5019197 aggctatagctttacagaagaaggaagagttggaggctgata 5019238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 456
Target Start/End: Original strand, 5019593 - 5019656
Alignment:
Q  390 gcttatgttgttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtg 456  Q
    |||||| ||||| |||| |||||||| |||||||||   ||||||||||||||||||||||||||||    
T  5019593 gcttatattgttagctacaagagaattgtattgtag---gactaatttatgcatgtttgttattgtg 5019656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 5004865 - 5004927
Alignment:
Q  390 gcttatgttgttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgt 455  Q
    ||||||||||||||||| |||||||| |||||   |||||||||||||||||||| || |||||||    
T  5004865 gcttatgttgttggctagaagagaattgtatt---gaaggactaatttatgcatgcttattattgt 5004927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 16426624 - 16426661
Alignment:
Q  200 cagaagaaggaagagttggaggctgatagggctgtggc 237  Q
    |||||||||||||||| |||||||||||||||||||||    
T  16426624 cagaagaaggaagagtcggaggctgatagggctgtggc 16426661  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 5005005 - 5005049
Alignment:
Q  390 gcttatgttgttggctaaaagagaatcgtattgtagaaggactaa 434  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||    
T  5005005 gcttatgttgttggctataagagaattgtattggagaaggactaa 5005049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 468
Target Start/End: Original strand, 5004813 - 5004871
Alignment:
Q  410 gagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgcctatg 468  Q
    |||||| |||||||||||| |||||| ||||||||||| |||| ||| |||||| ||||    
T  5004813 gagaattgtattgtagaagaactaatgtatgcatgtttattatcgtggacctgcttatg 5004871  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 456
Target Start/End: Original strand, 5019799 - 5019828
Alignment:
Q  427 aggactaatttatgcatgtttgttattgtg 456  Q
    ||||||||||||||||||||||||||||||    
T  5019799 aggactaatttatgcatgtttgttattgtg 5019828  T

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Target: scaffold0275 (Bit Score: 182; Significance: 3e-98; HSPs: 8)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 201 - 468
Target Start/End: Complemental strand, 21228 - 20950
Alignment:
Q  201 agaagaaggaagagttggaggctgatagggctgtggctgctgatgcgagccgaagtgatgatgaaagaacagggaa------tgagatgacctgagagag 294  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| |  ||  ||||||||||||||||| ||||||      ||||||||| |||||||     
T  21228 agaagagggaagaggtggaggctgatagggctgtggctgctgataccggctcaagtgatgatgaaagaagagggaaaaagaatgagatgac-tgagagaa 21130  T
Q  295 agag------gctcaattattaatgttggagcagttactgaagtactcaattataggtttgaaatttatgtgttagtgagttatttatgtgttcgtgtgt 388  Q
    ||||      ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21129 agagaaaaaagctcagttattaatgttggagcagttactgaagtactcaattataggtttgaaatttatgtgttagtgagttatttatgtgttcgtgtgt 21030  T
Q  389 ggcttatgttgttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgcctatg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21029 ggcttatgttgttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtgtacctgcttatg 20950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 6949 - 6827
Alignment:
Q  116 gcggctgaggctttagcttttgaagagatggaggttgctattttggccgccattgaaaagggtcgaaacaaggctttagctttacagaagaaggaagagt 215  Q
    ||||||||| ||||||||||  ||||| |||||| |||||||||||| |||||| |||| |||||| || |||||||||||||||||||||||||| | |    
T  6949 gcggctgagcctttagctttaaaagagttggaggctgctattttggctgccattcaaaaaggtcgagacgaggctttagctttacagaagaaggaaaatt 6850  T
Q  216 tggaggctgatagggctgtggct 238  Q
    |||| ||||||| ||||| ||||    
T  6849 tggaagctgatatggctgaggct 6827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 12586 - 12464
Alignment:
Q  116 gcggctgaggctttagcttttgaagagatggaggttgctattttggccgccattgaaaagggtcgaaacaaggctttagctttacagaagaaggaagagt 215  Q
    ||||||||| ||||||||||  ||||| |||||| |||||||||||| |||||| |||| |||||| || |||||||||||||||||||||||||| | |    
T  12586 gcggctgagcctttagctttaaaagagttggaggctgctattttggctgccattcaaaaaggtcgagacgaggctttagctttacagaagaaggaaaatt 12487  T
Q  216 tggaggctgatagggctgtggct 238  Q
    |||| ||||||| ||||| ||||    
T  12486 tggaagctgatatggctgaggct 12464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 6817 - 6758
Alignment:
Q  173 aagggtcgaaacaaggctttagctttacagaagaaggaagagttggaggctgatagggct 232  Q
    ||||||||| || |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  6817 aagggtcgagacgaggctttagctttacagaagaaggaagagtcggaagctgatagggct 6758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 468
Target Start/End: Complemental strand, 11715 - 11670
Alignment:
Q  423 tagaaggactaatttatgcatgtttgttattgtgtacctgcctatg 468  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  11715 tagaaggactaatttatgcatgtttgttattgtgtacctgcttatg 11670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 12454 - 12395
Alignment:
Q  173 aagggtcgaaacaaggctttagctttacagaagaaggaagagttggaggctgatagggct 232  Q
    ||||||||  || |||||||||||||||||||||||||||||| ||||||||||| ||||    
T  12454 aagggtcgtgacgaggctttagctttacagaagaaggaagagtcggaggctgatacggct 12395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 21351 - 21302
Alignment:
Q  183 acaaggctttagctttacagaagaaggaagagttggaggctgatagggct 232  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  21351 acaaggctttagcttcagagaagaaggaagagttggaggctgttagggct 21302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 456
Target Start/End: Complemental strand, 11676 - 11610
Alignment:
Q  390 gcttatgttgttggctaaaagagaatcgtattgtagaaggactaatttatgcatgtttgttattgtg 456  Q
    |||||||||||| |||  |||| ||| ||||| |||||||||||||||||||||||| |||| ||||    
T  11676 gcttatgttgttagcttcaagataattgtattctagaaggactaatttatgcatgttcgttactgtg 11610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 46303024 - 46302991
Alignment:
Q  194 gctttacagaagaaggaagagttggaggctgata 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  46303024 gctttacaggagaaggaagagttggaggctgata 46302991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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