View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19990_low_2 (Length: 435)
Name: NF19990_low_2
Description: NF19990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19990_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 422
Target Start/End: Complemental strand, 34847641 - 34847225
Alignment:
| Q |
15 |
tatttaattggttggacatagtttattcaatgtggatactttttataattgannnnnnnnnnnnnnnnnnnnnnnaagcataagaaatactagatcacaa |
114 |
Q |
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| T |
34847641 |
tatttaattggttggacatagtttattcaatgtggatactttttataattgattttttttttcaaaactttttttaagcataagaaatactagatcacaa |
34847542 |
T |
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| Q |
115 |
ggatatattgataccttatcttatttgtaagtacttgtgtatggactatactaatacacaccacattgaattcacctgattttcctctttcc-nnnnnnn |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34847541 |
ggatatattgataccttatcttatttgtaagtacttgtgtatggactatactaatacacaccacattgaattcacctgattttcctctttccttcttttt |
34847442 |
T |
|
| Q |
214 |
nncaataaaatcataattctatcacacacaaaattaccaattaagagatatttttggatgaactcac-----tttgcttgatagtattgacttgagattt |
308 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||| |
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| T |
34847441 |
gtcaataaaatcataattctatcgcacaaaaaattaccaattaagagatatttttggatgaacccacttaagtttgcttgatagtattgacttgaaattt |
34847342 |
T |
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| Q |
309 |
tgaaatgtacttatttcaaaatctcatttcgattatctcggatatcaatttcaatgagctagttgccat---nnnnnnnnntggatgtacaaaatattaa |
405 |
Q |
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|||| ||| ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34847341 |
tgaagtgtgtttatttcaaaatctcattttgattctctcgcgtatcaatttcaatgagctagttgccataaaaaaaaaaattggatgtacaaaatattaa |
34847242 |
T |
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| Q |
406 |
ttgtattatgtatctat |
422 |
Q |
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||||||||||||||||| |
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| T |
34847241 |
ttgtattatgtatctat |
34847225 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 6049301 - 6049261
Alignment:
| Q |
322 |
tttcaaaatctcat-ttcgattatctcggatatcaatttca |
361 |
Q |
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|||||||||||||| || ||||||||||||||||||||||| |
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| T |
6049301 |
tttcaaaatctcatatttgattatctcggatatcaatttca |
6049261 |
T |
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