View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19990_low_4 (Length: 236)
Name: NF19990_low_4
Description: NF19990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19990_low_4 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 29074080 - 29073873
Alignment:
| Q |
14 |
gcacagatagaaagtattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaacccaacaagaccaggaaataaataaa |
113 |
Q |
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| T |
29074080 |
gcacacatagaaagtattttatataacacaaagcgtagtagaaaagaacactaaagtcttacaaaaacaataaaccgaacaagaccaggaaataaataaa |
29073981 |
T |
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| Q |
114 |
aattcaatgataatattaatgtaattattgcaaggattttggaggtaattattgcatcctgcccatgaatactcaagtcaattcatctcgtcacaaaact |
213 |
Q |
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| T |
29073980 |
aattcaatgataatattaatgtaattattgcaaggattttggaggtaattattgcatcctgccgatgaatacacaagtaaattcatctcgtcacaaaact |
29073881 |
T |
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| Q |
214 |
aatgtacc |
221 |
Q |
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|||||||| |
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| T |
29073880 |
aatgtacc |
29073873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 29103501 - 29103404
Alignment:
| Q |
20 |
atagaaagtattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaacccaacaagaccaggaaataaataaaaatt |
117 |
Q |
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| T |
29103501 |
atagaaagtattctatttagtgcaaggcgtattagaatagaacactaaagtcttacaaaagcaacaaaccgaacaagatttggaaataaataaaaatt |
29103404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 55729 - 55789
Alignment:
| Q |
28 |
tattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaac |
88 |
Q |
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| T |
55729 |
tattatatctaacacagtgcgtactagaataaaacactagagtcttacgaaaacaacaaac |
55789 |
T |
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