View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19991_high_1 (Length: 490)
Name: NF19991_high_1
Description: NF19991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19991_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 475
Target Start/End: Original strand, 23289114 - 23289579
Alignment:
| Q |
11 |
caaaggtcaatattaatatttatacatagagatattttgacattccaaagttttattattcttttatatataaataaaagaagtaagatgcactttatgc |
110 |
Q |
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| T |
23289114 |
caaaggtcaatattaatatttatacatagagatattttgacattccaaagttttattattcttttatatataaataaaagaagtaagatgcactttatgc |
23289213 |
T |
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| Q |
111 |
ctgattagtgattctattcacatataagctacaaattaaaaatccttttgaaattccaacttatagtatatagatatattgcagttgtgtaatttaacca |
210 |
Q |
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| T |
23289214 |
ctgattagtgattctattcacatataagctacaaattaaaaatccttttgaaattccaacttatagtatatagatatattgcatttgtgtaatttaaaca |
23289313 |
T |
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| Q |
211 |
caatttctgacaccacatctcaacaccgaatatcatcgagtgtggacttcggtgtcgaagagagaacaaacatttgatgatagagaaaaaacaatttaaa |
310 |
Q |
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| T |
23289314 |
caatttctgacaccacgtctcaacaccaaatatcatcgagtgtggacttcggtgtcgaagagagaacaaacatttgatgatagagaaaaaacaatttaaa |
23289413 |
T |
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| Q |
311 |
actcaatccgtataaacatacggtacttgtgtcctaaactgtgtaaacaaaacatttctctacctaaaatccataccactaacaaaaattgtagtacaaa |
410 |
Q |
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| T |
23289414 |
actcaatccgtataaacatacggtacttgtgtcctaaactgtgtcaacaaaacatttctctacctaaaatccataccactaacaaaaattgtagtacaga |
23289513 |
T |
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| Q |
411 |
cattttccattttacaatccaaac-nnnnnnngtaaaccaaacacttcaagttcagaagttccata |
475 |
Q |
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| T |
23289514 |
cattttccgttttacaatccaaacaaaaaaaagtaaaccaaacacttcaagttcagaagttccata |
23289579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 81 - 433
Target Start/End: Original strand, 23282841 - 23283194
Alignment:
| Q |
81 |
taaataaaagaagtaagatgcactttatgcctgattagtgattctattcacatataagctacaaattaaaaatccttttgaaattccaacttatagtata |
180 |
Q |
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| T |
23282841 |
taaataaaagagataagatgcactttatgcctgattagtgattatattcacatataagctacaaattaaaaatccttttgaaat-ccaacttgttgtata |
23282939 |
T |
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| Q |
181 |
tagatatattgcagttgtgtaatttaaccacaatttctgacaccacatctcaacaccgaatatcatcgagtgtggacttcggtgtcgaagagagaacaaa |
280 |
Q |
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| T |
23282940 |
tagatatattgcagttgtgtaatttaaacacaatttctgacaccacgtctcaacaccgtatatcatcgagtgtggacttcggtgtcaaaaaatgaacaaa |
23283039 |
T |
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| Q |
281 |
catttgatgatagagaaaaaacaatttaaaactc--aatccgtataaacatacggtacttgtgtcctaaactgtgtaaacaaaacatttctctacctaaa |
378 |
Q |
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| T |
23283040 |
catttgaagatagagaaaaaacaatttaaaacacaaaatccgtataaatatacggtacctgtgtcctaaactgtgcaaacaaaacatttccctacataaa |
23283139 |
T |
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| Q |
379 |
atccataccactaacaaaaattgtagtacaaacattttccattttacaatccaaa |
433 |
Q |
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|||||||||||||||||||||||||||| | |||||||| ||| ||||||||||| |
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| T |
23283140 |
atccataccactaacaaaaattgtagtatagacattttcaattctacaatccaaa |
23283194 |
T |
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