View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19991_high_3 (Length: 359)
Name: NF19991_high_3
Description: NF19991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19991_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 33 - 345
Target Start/End: Complemental strand, 53167245 - 53166933
Alignment:
| Q |
33 |
tttttaatatattattgattattactaatagctaatattgaatacatatactcattgatgggtcttgaaatttcaacgagtgggagcaagattagttaga |
132 |
Q |
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| T |
53167245 |
ttttaaatatattattgattattactaatagctaatattgaatacatatactcattgacgggtcttgaaatttcaacgagtgggagcaagattagttaga |
53167146 |
T |
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| Q |
133 |
gagatatgtcatttttccgttacaaaaatccgtccttaaatttattattttattagtagtatatgatgatatcattgttaataaataaaagtttagagat |
232 |
Q |
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| T |
53167145 |
gagatatgtcatttttccgttacaaaaatccgtccttaaatttattattttattagtagtatatgatgatatcattgttattaaataaaagtttagagat |
53167046 |
T |
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| Q |
233 |
tagaaatatctataaattataattgttttctatgcatgtgatcaaacaaacattcattaacttatctctcacagttgaacatttaagttttcacaaatta |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53167045 |
tagaaatatctataaattataattgttttctatgcatgtgatcaaacaaacattcattaatttatctctcacagttgaacatttaagttttcacaaatta |
53166946 |
T |
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| Q |
333 |
cacaatatttttg |
345 |
Q |
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| T |
53166945 |
cacaatatttttg |
53166933 |
T |
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